current user: public |
|
Query: gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656], from E.rectale |
. 10 . 20 . 30 . 40 . | |||||||
# | Score | Template | Links and tools | %id | First | MLYVFPFFSPDSFIFTVFLFFQHNITCNNYSFLITLHISLFHYSCNN | Last |
1 | -4.490 | [KT] COG3835 Sugar diacid utilization regulator | ali follow.. | 16 | 315 | ..........GQLVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEK | 351 |
2 | -4.180 | [S] COG1547 Uncharacterized conserved protein | ali follow.. | 14 | 19 | ......YFECHEVLEERWKQDPPGRRKPHWVALIQIAVGLYHERRGN | 59 |
3 | -4.110 | [UR] KOG4677 Golgi integral membrane protein | ali follow.. | 21 | 508 | ..........DSTAFKLLSMLRGHPSARLFFYFIIMHLWLFF..... | 541 |
4 | -3.830 | [S] COG5134 Uncharacterized conserved protein | ali follow.. | 22 | 4 | ..YIPPEGPNAKRRNVIRFEMPFPVWCNNCENIITTKIWSFSLKCHL | 70 |
5 | -3.740 | [T] KOG3979 FGF receptor activating protein 1 | ali follow.. | 13 | 172 | ...........TIFPLIYWYIQHKFKHIPGAYTV---YAFFEWS... | 201 |
6 | -3.730 | [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) | ali follow.. | 17 | 106 | LVYIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTMHFSLMHILFN. | 154 |
7 | -3.710 | [S] KOG2969 Uncharacterized conserved protein | ali follow.. | 37 | 3 | .................YAAFQHNVS----GFLVNAKQTDFN--CLN | 26 |
8 | -3.710 | [R] COG5236 Uncharacterized conserved protein, contains RING Zn-finger | ali follow.. | 25 | 194 | .......FPCELEIFTQNQLRNHQTKCSGKRFYLYIHMRNQHEKCH. | 250 |
9 | -3.710 | [S] KOG2885 Uncharacterized conserved protein | ali follow.. | 18 | 5 | ....................LEERLRANSSAFLLALIPAKYYYDEKS | 33 |
10 | -3.690 | [O] KOG3488 Dolichol phosphate-mannose regulatory protein (DPM2) | ali follow.. | 38 | 27 | .VIILPFVDSDHFIHKYFL............................ | 44 |
FFAS is supported by the NIH grant R01-GM087218-01
|
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96. |