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Query: gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTIRDLLAAESINLNGTPAGKTEALNQCIDLMAKSGKIADVEKYRKGVFAREEEGTTGIGMGIAIPHCKSDAVTKAGLAAMVVKDGVDFESLDGTPAKIIFLIAAPNTEDNVHLQVLSKLSVMLMDEQFTNSLINAGSVDEFLNIIDSAEKAKDEKEAAKEAKAKEPVEVKKDDVFIVAVTACPTGIAHTYMAAEAIEKKAKELGYQVKVETRGSGGAKNVLTDDEIAKAAGVIVACDTNVPTDRFDGKKVIECQVSDGINKAEELIKRIAAGDAPVFKASGKKEASHSSVGGKESVGHQIYKHLMNGVSHMLPFVVGGGILIAIAFLIDGFSVDLNSLPADQRANFGTITQAAAMFKGIGGTAFGFMLPILAGFIAMSIADRPGLAVGFVGGSIAANGTSGFLGALVAGFVAGYIVLLLKKVFSKLPESLDGMKPVLLYPLLGIFLVGVIMQFVVEPPIGALNTAINNGLNGLNGASAVVLGVLLGGMMSVDMGGPVNKAAYVFGTASIAAGNYNIMAAVMIGGMVPPIAIALATIFFKNKFTADERKAGPTNFIMGLSFITEGAIPFAASDPLHVLPACVVGSAVAGGLSMAFGCTLMAPHGGIFVVPTIGNPLMYLVALVIGSFIACGLLGLLKKKVSELast
1 -87.800[G] COG1299 Phosphotransferase system, fructose-specific IIC component  ali follow..  55  1.............................................................................................................................................................................................................................................................................................................YKHLMSGVSHMLPFVIGGGIAIAIAFMLDQI----LGVPQDQLAKLGSYNEIPALLKQIGDVAFGFMLPVFAGYIAYSISDRPGLVAGFVAGGVASVGGAGFLGALVGGFLAGYAVELIKVMLKKLPKTLDGIKVVLFYPVLSVLIVGLLM-LLLNVPMSALNTWLNDFLNSLSGTNAVILGLLLGAMMAADLGGPINKAAYIFATGTLAASVATIMAATMAAGMVPPLATFVATLVFRNKFTAQERDAGLTNSILGASFITEGAIPFAAADPLRMIPSFIAGSAITGAIVMFLNIKVLAPHGGVFVIFLVSQPWFYLIAIVIGTIISAALIGVLRKKPT. 339
2 -51.300[G] COG1445 Phosphotransferase system fructose-specific component IIB  ali follow..  49  1...........................................................................................................................................................................SGQDFIVAVTACPTGIAHTYMAEEALKKQAAEMGVAIKVETNGASGVANRLTAEDIQRAKGVIVAADKAVEMDRFDGKQFIARPVADGIKKSQELISLILNNEGNTYHAKNGKSETAVSTEKTS........................................................................................................................................................................................................................................................................................................................................................... 124
3 -44.500[G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain  ali follow..  20  3.....ELTENDIHLSSQAVNKDQAIEMVAQALIQSGYVEE--GYLAGMLEREAQITTYLGNGIAIPHGSVTTVKKTGVKIFQFPQGVAW---DKDNIAYLVIGLAADS--DGHLALLRQLARLLHDKETVKHLITTQDVSEFYARLMGKSAT----------NQPDLISLDLDTTSLLTLTARNAEKLQQYQAVNNLASPALPLGQGIWLTDATLGN---QKNACAFSRAKNPFLHNGKSVHVLTIAAIDNNIHPV.................................................................................................................................................................................................................................................................................................................................................................................................. 243
4 -38.300[G] COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB  ali follow..  17  1..............................................................................................................................................................................MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEII---------------DNPNDAEMAIVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG............................................................................................................................................................................................................................................................................................................................................................... 102
5 -35.900[GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)  ali follow..  18  1......MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHD--TWPQALIAREAEFPTGIQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDAVSLVIALIVENP--QQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 150
6 -14.100[G] COG2213 Phosphotransferase system, mannitol-specific IIBC component  ali follow..  18  48....................................................................................................................................................................................................................................................................................................................................................................LAKLVGPMITYLLPLLIGYTGRLVGGERGGVVGAITGVIVGADMPMFLGSMIAGPLGGYCIKKFDSWVDKIKSGFEMLVNNFSAGIIGMILA-ILAFLGIGPAVEVLSKILAAGVNFMVAHDMLPLASIF-----------VEPAKILFLNNAINHGIFSPLGIQQSHEM-PGMGVLLAYMFFGRGSAKQSAGGAAIIHFLG--GIHEIYFPYVLMNP-RLILAVILGGMTGVFTLTILNGGLVSP-GSILAVLAMTPKFANIAAIVAAMAVSFVVSAILLK.... 335
7 -10.400[G] COG3414 Phosphotransferase system, galactitol-specific IIB component  ali follow..  10  1..............................................................................................................................................................................MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEYKSEL-----SGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKE................................................................................................................................................................................................................................................................................................................................................................................. 94
8 -10.300[R] COG3641 Predicted membrane protein, putative toxin regulator  ali follow..  15  39.................................................................................................................................................................................................................................................................................................................................................................LSFLVTVGAIGKTMLIPGIGVGIAMCLHANTAAASAVIGGGAVAALAGGGVGEPVGAILAVIVAVWTGKRVTGKTK------DMILIPGVSLLAGGLS--ILFAKIMAPILASVSLGISSLIGGSPLISSMAIAFVFGLLILSPASSAALAIALQLDPTAS----AAALIGCSVQFVSFAVLSY-------RDNNWGAFFAQLICTPKLQ---TPNIIRKPSLMLVPLLTTLIAGPLGVMVFHIQAASEVAGLGLCAFVA---FILVAVVLPGVIALIVRPFLIK.... 324
9 -8.560[G] COG1455 Phosphotransferase system cellobiose-specific component IIC  ali follow..  14  21.........................................................................................................................................................................................................................................................................................................KQPHVNAIKNGFIRLMPLTLAGAMFVLINNV-GEGSFFYSLGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFIGMALAEEDALAAGLLS--ANWLGGANIISGIIIGLVVAEMFTFIVRR-ASVSRSFSALIPGFII-LSVMGIIAWALNTWGTNFHQIIMDTISTPLASLGSVVGWAYVIFVPLLWFFGIHGGIMTPWALENIATYQQYGSVEAALIFLGGSGATLGLILAIFIASR--RADYRQVAKLALPSGIFQINE-FIPFVLVQPILAAITAAYYMGIIPPVTNIAPWTMPTGLGAFFNT--VVALLVALFNLGIATLIYLPFVVVANKAQNA 436
10 -8.160[G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific  ali follow..  14  7...........................................................................................................................................................................................................................................................................................................GVLQKIGRALMLPVAILPAAGILLAIGNAM----QNKDMIQVLHFLSNDNVQLVAGVMESAGQIVFDNLPLLFAVGVAIGLANGDGVAGAIIGYLVIPTLATGVFGGIIVGVLAALLFNRFYTI--ELPQYLAGKRFVPIVTSISALILGLIMLVIFSTGLVEANPTLAAFIFGVIERSLIPFGLIFYSPFWYEFFSYKSAAGEIIRGVQLTAGTFMTGKYPFMMFGLPAAALAIYHEAKPQNKKLVAGIMGSAALTSFLTGITEPLFSFLFVAPVLFAIHCLF-AGLSFMVMQLLNVKIGMTFSGYFLFGILPNRTAWWLVIPVGLGLAVIYYFGFRFAIRK 414

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.