current user: public

If you have questions about the server, please let us know.

Query: gi|15644639|ref|NP_206807.1| orotidine 5`-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst MQLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLKLYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFSEEEFLMVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPGIRLDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREVVLELLKDCLast
1 -92.500[F] COG0284 Orotidine-5`-phosphate decarboxylase  ali follow..  33  5.KVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHK--RGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKEPLLIGVTVLTSMESADLQGIILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL 230
2 -58.200[G] COG0269 3-hexulose-6-phosphate synthase and related proteins  ali follow..  14  5.MLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKIL---SRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQV------VYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTG----------GLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSI 211
3 -44.700[F] KOG1377 Uridine 5`- monophosphate synthase/orotate phosphoribosyltransferase  ali follow..  19  253.NLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAHEFLIFEDRKFADIGNTVKKQYEGGIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEM-------SSTGSLATGDYTRAAVRMAEEHSEFVVGFISGS-------RVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIKRGSDIIIVGRGIISAADRLEAAEMYRKA. 469
4 -15.200[G] COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes  ali follow..  52..VMLAFDHGYFQGPTTGLERIDINIAPLFEHADVLM-CTRGILRSVVPPATNRPVVLRAS-ELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMA----VTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYEKGFERIVAGCP------VPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVV 273
5 -14.800[G] KOG3111 D-ribulose-5-phosphate 3-epimerase  ali follow..  15  11...ILNADLASLASECKKLLAAGADWLHLDVMDGHFVTFGHPVVESLRKSLGA-EPFFDVHL--MVSNPGQWVEPMAKAGASQFTFHYEAVDGDVA-VSELIEKIRKSGMKVGLSVKPGTSVEHILKHA--NHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVTPE-----------NIEISAQAGANAIVSGTGIIKAADQSVAMTTIRNAV 220
6 -14.200[G] COG0036 Pentose-5-phosphate-3-epimerase  ali follow..  12  10...ILSADFARLGEDTAKALAAGADV----VHFDVMLTIGPMVLKSLRNYGITAPIDVHLMVKP-----DRIVPDFAAAGASIITFHP----EASEHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVM--DKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEV-------DGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
7 -11.400[H] COG2022 Uncharacterized enzyme of thiazole biosynthesis  ali follow..  37.HLFTG-KFASSQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIA----------------GVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAETLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAKAFRLAV 249
8 -10.800[R] KOG3157 Proline synthetase co-transcribed protein  ali follow..  10  40PRLVAVSKTKPADMVIEA----------YGHGQRTF---GENYVQELLEKASNPKILSEIKWHFIGHLQKQNVNKLMAV-PNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVE-QHAVEVGSTNVRIGSTIFGERDYSKKPTP..... 258
9 -10.700[R] COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold  ali follow..  10  22..TLIDPEEQTPEEAVEIARAARGGTDGIMLGGSTTDSSEDNTARALR------------ENIDVPIILFPGNTTGVSRYADAIFFMSLLNST-IEALPMGYLVVEPGGTVGWVGDTKPVPRNKPDIAAAYAMAAEFLGMRLFYLEAGSGAPEHVPEEMIALVKRCTDQILIVGGGIR----------SGEDAARVAGAGADVVVTGTVVENSDNVEDKIREIVEGM 245
10 -9.140[G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase  ali follow..  10  16.GLIASCQPVDNGPMDSPEIVAAMAQASVIGGAAGLRIEGIENLKATRNVVNVPIIGIVKRDLPRISPFLQDIEELAAAGADIIAFDGTVRPTTREAIIKRIKE-------LGCLAMADCSN---------------FEEGMYCHNLGVEIIGSTMSGYTGGEIPAEPDYQLV-KDLNAAGCRVMAEGRYNTPELAIEIGAYSVTVGSALTRLEHIVSWFADAVKS. 226

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.