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current user: public |
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Query: gi|15644639|ref|NP_206807.1| orotidine 5`-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695], from H.pylori |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . | |||||||
# | Score | Template | Links and tools | %id | First | MQLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFLDEIRKIDENFKIFLDLKLYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTALMQRLNALKKRPLIMGVSALTSFSEEEFLMVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESLAIKEALGKDFLTLTPGIRLDQNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREVVLELLKDC | Last |
1 | -92.500 | [F] COG0284 Orotidine-5`-phosphate decarboxylase | ali follow.. | 33 | 5 | .KVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHK--RGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKEPLLIGVTVLTSMESADLQGIILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL | 230 |
2 | -58.200 | [G] COG0269 3-hexulose-6-phosphate synthase and related proteins | ali follow.. | 14 | 5 | .MLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKIL---SRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQV------VYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTG----------GLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSI | 211 |
3 | -44.700 | [F] KOG1377 Uridine 5`- monophosphate synthase/orotate phosphoribosyltransferase | ali follow.. | 19 | 253 | .NLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAHEFLIFEDRKFADIGNTVKKQYEGGIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEM-------SSTGSLATGDYTRAAVRMAEEHSEFVVGFISGS-------RVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIKRGSDIIIVGRGIISAADRLEAAEMYRKA. | 469 |
4 | -15.200 | [G] COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes | ali follow.. | 9 | 52 | ..VMLAFDHGYFQGPTTGLERIDINIAPLFEHADVLM-CTRGILRSVVPPATNRPVVLRAS-ELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMA----VTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYEKGFERIVAGCP------VPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVV | 273 |
5 | -14.800 | [G] KOG3111 D-ribulose-5-phosphate 3-epimerase | ali follow.. | 15 | 11 | ...ILNADLASLASECKKLLAAGADWLHLDVMDGHFVTFGHPVVESLRKSLGA-EPFFDVHL--MVSNPGQWVEPMAKAGASQFTFHYEAVDGDVA-VSELIEKIRKSGMKVGLSVKPGTSVEHILKHA--NHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVTPE-----------NIEISAQAGANAIVSGTGIIKAADQSVAMTTIRNAV | 220 |
6 | -14.200 | [G] COG0036 Pentose-5-phosphate-3-epimerase | ali follow.. | 12 | 10 | ...ILSADFARLGEDTAKALAAGADV----VHFDVMLTIGPMVLKSLRNYGITAPIDVHLMVKP-----DRIVPDFAAAGASIITFHP----EASEHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVM--DKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEV-------DGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL | 219 |
7 | -11.400 | [H] COG2022 Uncharacterized enzyme of thiazole biosynthesis | ali follow.. | 9 | 37 | .HLFTG-KFASSQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIA----------------GVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAETLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAKAFRLAV | 249 |
8 | -10.800 | [R] KOG3157 Proline synthetase co-transcribed protein | ali follow.. | 10 | 40 | PRLVAVSKTKPADMVIEA----------YGHGQRTF---GENYVQELLEKASNPKILSEIKWHFIGHLQKQNVNKLMAV-PNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVE-QHAVEVGSTNVRIGSTIFGERDYSKKPTP..... | 258 |
9 | -10.700 | [R] COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold | ali follow.. | 10 | 22 | ..TLIDPEEQTPEEAVEIARAARGGTDGIMLGGSTTDSSEDNTARALR------------ENIDVPIILFPGNTTGVSRYADAIFFMSLLNST-IEALPMGYLVVEPGGTVGWVGDTKPVPRNKPDIAAAYAMAAEFLGMRLFYLEAGSGAPEHVPEEMIALVKRCTDQILIVGGGIR----------SGEDAARVAGAGADVVVTGTVVENSDNVEDKIREIVEGM | 245 |
10 | -9.140 | [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase | ali follow.. | 10 | 16 | .GLIASCQPVDNGPMDSPEIVAAMAQASVIGGAAGLRIEGIENLKATRNVVNVPIIGIVKRDLPRISPFLQDIEELAAAGADIIAFDGTVRPTTREAIIKRIKE-------LGCLAMADCSN---------------FEEGMYCHNLGVEIIGSTMSGYTGGEIPAEPDYQLV-KDLNAAGCRVMAEGRYNTPELAIEIGAYSVTVGSALTRLEHIVSWFADAVKS. | 226 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |