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Query: gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGIFLast
1 -12.000[U] COG3838 Type IV secretory pathway, VirB2 components (pilins)  ali follow..  17  18.......AIAVNLMVAPVAHASGWEQPLEKILQSVEGPVSKIMAVIIIIVTGLTLA--FGDSSGGFRRLIQIVFGLSIAFAASSFFLSFFS.. 103
2 -6.820[I] KOG3845 MLN, STAR and related lipid-binding proteins  ali follow..  14  28TFFDTSITILLWLLCTVTRDDDWDKVFFNEINIFNPKFIRISLFDIVLLAVLVYGICLVKQWYTVAFTTLASSAYILMLIITSFTLCWS.... 140
3 -6.670[S] COG5336 Uncharacterized protein conserved in bacteria  ali follow..  24  44.............................AAAMKLSSEFIAGILVGAFLGYLLDHFAGTGPWGMIVLLLLGFCAGVLNVLRS........... 96
4 -6.100[S] KOG4556 Predicted membrane protein  ali follow..  17  1MSVRWL-LSLLLATWTLLSIARLVFDLIGNLWVVVVFDFVQ-IVLLISGLFGATQKRRPLLYTLLSSNALSVTINVLIFL-------WYIGVF 84
5 -5.890[S] KOG4843 Uncharacterized conserved protein  ali follow..  15  856...........................WSRCKKPLPQKLMRSIGFPLPADHIEVLEENLD-WEDVQWSQTGVWIAEYTLARVHFLSP...... 916
6 -5.820[S] KOG2846 Predicted membrane protein  ali follow..  9  1..........MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYTIGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQ.. 99
7 -5.790[S] KOG4502 Predicted membrane protein  ali follow..  13  577RVMEFFVIIPFIPIEYLRINWGSRGNLLESLALSTVLSIPIIIILVYLEFFQNYVLF------EEIFTYVMGFFILETLLSLVLTITFS.... 664
8 -5.600[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  7  65.....IKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYL-----LTFDSTEIYKYL............................ 120
9 -5.550[S] COG5197 Predicted membrane protein  ali follow..  18  158.......IMGLVTYILIWNTQQGLKGSFEDLYYKLSSTLAFVCLDLLILKLGLYLLI-VELLCYVGYKFVPLILAQLLNVTMPFNLNILIKFY 254
10 -5.510[R] COG2409 Predicted drug exporters of the RND superfamily  ali follow..  13  223....ITVVLLLITVGVELTAARGVVAVLGHSGAIGLTTFAVSLLTSLAIAAGTYGIFIIGRYQE-AYYTMYRGTAHVILGSGLTIAGATFCLS 321
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.