current user: public
If you have questions about the server, please let us know.

Query: gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .
# Score Template Links and tools%idFirst MILKSSIDRLLQTIDIVEVISSYVNLRKSGSSYMACCPFHEERSASFSVNQIKGFYHCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEYDKGVYYDHKEDYHLLEMVSSLYQEELFNAPFFLNYLQKRGLSLESIKAFKLGLCTNRIDYGIENKGLNKDKLIELGVLGKSDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTLKEKAAKYINSPQSKLFDKSSLLYGYHLAKEHIYKQKQVIVTEGYLDVILLHQAGFKNAIATLGTALTPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRGGVILFENNLDPADMIANGQIETLKNWLSHPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNFSLLLQSEYKPLIATLLQAPLHVLGIRERVSFQPFYPKTEKPNRPQRFAHVSSAPSLEFLEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLDDPKLVALLLDANLPLKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELVAILast
1 -34.100sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1  ali   16  36..........VTATEIRQYLRGHIPFQDGHSCLRALSPFGVTTSFSLFIDKTTGHFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIWNRAI-PLWELPDQEEVQLADT------MFGLTKVTDDTLKRFSVR-----------------------------------YLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYLFGLPLISR---RDAEVVLTSRELDSLALNQSTGLPTLTPRGTTCLPPALLPYLEQFRRIVFWLGDDLRSWEAA.............................................................................................................................................................................................................................................................. 299
2 -23.000sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1  ali   13  3...........................................................................................................................EVQLADTMFGLTKVTDDTLKRFSVR-----------------------------------YLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYLFGLPLISR---RDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCPALLPYLEQF-RRIVFWLGDDLRSWEAAKLFARKL---NPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTALPAWHKSIVSFRQLRELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEY.................................................................................................................................................. 259
3 -6.730sp|Q5FYB0|ARSJ_HUMAN Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1  ali follow..  9  74...........SQPHLIFILADDQGFRDVG--------YHGSKTPTLDKLAAEGVYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDN-----------------------------ATLPQKLKEVGYSTHMVGKWHLGFYRKEC----TRRGFDTDLYENDNAAWDYDNGIYSTQMYTQRVQQILASH------------NPTKPIFLQAVHSPLQAPGRYFEHYRSIININRRR--------YAAMLSCLDEAINNVTLALKT----------YGFYNNSIIIYSSDNGGSNWPLRGSKGTYWEG----------GIRAVGFVHSPLLKNKGTVCKELVHITDW-YPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDIL.................................................................................................................................................................... 419
4 -6.670sp|Q92993|KAT5_HUMAN Histone acetyltransferase KAT5 OS=Homo sapiens GN=KAT5 PE=1 SV=2  ali follow..  14  233.....................ECIELGRHRLKPWYFSPYPQE------LTTLPVLYLCEFC---------------LKYGRSLKCLQRHL----PGNEIYRKGTISFFEIDGRKNKSYSQNL-----AKCFLDHKTLYYD-TDPF-LFYVMTEYDCK-------------VGYFSKEKESTEDYN-----LTLPPYQRRG-LIEFS--ELSKVEGK-TGTPEKPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTLSED..................................................................................................................................................................................................................................................................... 479
5 -6.210sp|P49760|CLK2_HUMAN Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1  ali follow..  13  144.......................................EDDAEGHLIYHVGDWLQERYGEGTFGRVVQ-CVDHRRGGARVALKIIAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHM--GLSTFDFLKDLPYPIHQVRHMAFQLCQA---KFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVRVVDFGSATFDHESTRHYRAPEVILWSQPCDVWSI------------CIIFEYYVGFTLFQTHDNREHLAMMERILGPIPSRMIRKTRKQKYF--TSAGRYVRENCKPLRRYLTSEAEEHHQLFD---EPAKRLTLGEA............................................................................................................................................................................................................................ 473
6 -6.090sp|P49759|CLK1_HUMAN Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2  ali follow..  11  142.......................................EDDEEGHLICQSGDVLSARYGEGAFGKVVE-CIDHKAGGRHVAVKIVAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI--GLSTYDFIKELPFRLDHIRKMAYQICKS---NFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDESTRHYRAPEVILWSQPCDVWSI------------CILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKR----FHHDRLDWDEHSSAGRYVSRRCKPLKEFMLSQDVEHERLF................................................................................................................................................................................................................................. 451
7 -6.050sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1  ali follow..  10  140.......................................EDDEEGHLICQSGDVLRARYGEGAFGKVVE-CIDHGMDGMHVAVKIVAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHV--GLSTYDFIKELPFQIDHIRQMAYQICQS---NFLHHNKLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIKVVDFGSATYDDESTRHYRAPEVILWSQPCDVWSI------------CILIEYYLGFTVFQTHDSKEHLAMMERILGPIPQHMIQKTRKR----FHHNQLDWDEHSSAGRYVRRRCKPLKEFMLCHDEEHEKLF................................................................................................................................................................................................................................. 449
8 -6.000sp|Q5FYB1|ARSI_HUMAN(removed signalp:1-23) Arylsulfatase I OS=Homo sapiens GN=ARSI PE=1 SV=1  ali follow..  10  22...........QPPHIIFILTDDQGYHDVG--------YHGSETPTLDRLAAKGVYIQPICTPSRSQLLTGRYQIHTGLQHSIIRPQQPNCLPLDQ-----------------------------VTLPQKLQEAGYSTHMVGKWHLGFYRKEC----TRRGFDT-DLHEGENVAWGLSGQYSTMLYAQRASHILASH------------SPQRPLFLQAVHTPLQSPREYLYRYRTMGNVARRK--------YAAMVTCMDEAVRNITWALKR----------YGFYNNSVIIFSSDNGGQTFSGGSNWPLRGR----KGTYWEGGVRGLGFVHSPLLKRKQRTSRALMHITDW-YPTLVGLAGGTTSAADGLDGYDVWPAISEGRASPRTEIL.................................................................................................................................................................... 366
9 -5.970sp|Q9H7Z6|MYST1_HUMAN Probable histone acetyltransferase MYST1 OS=Homo sapiens GN=MYST1 PE=1 SV=2  ali follow..  12  180.....................DKIHIGNYEIDAWYFSPFPED------YGKQPKLWLCEYC------LKYMKYEKSYR-----FHLGQCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNL-----AKLFLDHKTLYFD-VEPF-VFYILTEVDRQ-------------VGYFSKEKESPDGNN-----LTLPPYQRRG-LIAFS--ELSKLEST-VGSPEKPLSDLGKLSYRSYWSWVLLE------ILRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTPK..................................................................................................................................................................................................................................................................... 420
10 -5.960sp|Q8WY41|NANO1_HUMAN Nanos homolog 1 OS=Homo sapiens GN=NANOS1 PE=1 SV=2  ali follow..  16  204..........................ARLLKPELQVCVFHILKGPDGRVLPVLRRYTCPLCGASGD------NAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 291
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.