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Query: gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINATIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGPGKSGDQSVIFDGQPGHDSRSINCNLTGYNNGVSGPLSIDNFKTLNQAYQTIQQALKQDSGFPVLDSKGKQVTIKITTQTNGANKSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNTAHNSNGGAPWNLNTTGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNNPQSNQNAPKDFNPYTSADRAFAQNMLNHAQAQAKMLELADQMKKDLNTIPKQFITNYLAACRNGGGTLPDAGVTSNTWGAGCAYVEETITALNNSLAHFGTQADQIKQSELLARTILDFRGSLKDLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQIGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHVAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAYLast
1 -6.930sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1  ali   15  14.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LRVGWS---FSRPQLG------FSYGFDGRGLKAENGQFE--EFGEN-DVIANF-ETEEVELSFSKNGEDLGVAFWISKDSLADR-----------PHVLCKNCVVELNFG.......................................................... 115
2 -6.900sp|Q9BX73|TM2D2_HUMAN(removed signalp:1-35) TM2 domain-containing protein 2 OS=Homo sapiens GN=TM2D2 PE=2 SV=1  ali follow..  13  110....................................................................................................................................................................................................................................................................................................................................................................................................................................................................YTGHYFITTLLYSFFLGC---------FGVRFC--LGHTGTAV--------GKLLTLGLGIWWFVDLI.................................................................................................................. 160
3 -6.810sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2  ali   19  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SYGYKSTNSRFENYG--------------------------KFAEN-DVIADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALY--------PHVLVKNCAVEFNFG.......................................................... 84
4 -6.780sp|P19801|ABP1_HUMAN(removed signalp:1-19) Amiloride-sensitive amine oxidase [copper-containing] OS=Homo sapiens GN=ABP1 PE=1 SV=4  ali   11  109..........................................................................................................................................................................................................................................................................................................................................................................................................................................EPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLGGWSFAFRLRSSSGLQVL--VHFG-------------ERIAYEVSVEAVALYGGHTP-------------------------------------AGMQTKYLDVGWGLGSVTH---------------ELAPGIDCPFLDTFHYYDADDPVHYPRALCLF-NYDYIW 296
5 -6.740sp|Q9BX74|TM2D1_HUMAN(removed signalp:1-37) TM2 domain-containing protein 1 OS=Homo sapiens GN=TM2D1 PE=1 SV=1  ali follow..  21  79....................................................................................................................................................................................................................................................................................................................................................................................................................................................................VNGYSYKVAVALSLFLGW---------LGARFY--LGYPALGL--------LKFCTVGCGIGSLIDFI.................................................................................................................. 129
6 -6.720sp|Q9NWL6|ASND1_HUMAN Asparagine synthetase domain-containing protein 1 OS=Homo sapiens GN=ASNSD1 PE=2 SV=2  ali   19  6...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDDSIGCAVWFASRGIGWL---------VAQEGVKSYQSNAKVVLTGIGADEQ------------------LAGYSRHRVRFQSHGLEGLNKEIMMELGRISSRNLG-------RDD-----------IGDHGKE--ARFPFLDENVVS...................... 109
7 -6.620sp|Q3LI72|KR195_HUMAN Keratin-associated protein 19-5 OS=Homo sapiens GN=KRTAP19-5 PE=1 SV=1  ali follow..  17  4.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YGNYYG-----GLG-YGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGFSG............................................................................................ 70
8 -6.470sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1  ali   15  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LGYDKFYSWRSKKGTKFHQSIGKHYSS-------------GYGQG-DVL--------------------GFYIN-EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVY-----AISLYKSCTVSINFGPCF 132
9 -6.440sp|Q76KD6|SPERI_HUMAN Speriolin OS=Homo sapiens GN=SPATC1 PE=2 SV=2  ali follow..  17LVRENEELKKLVRLIRENHELKSAIKTQAGGLGISGFTSGLGEATAGLSSRQNNGVFLPPSPAVANERVLEEVGIMALAPLAEMLTSLQPSATPGSLMSPLTGTLSTLLSGPAPTSQSSPLTSFLTSPIAGPLTGTLASSLGLPSTGTLTPSSLVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPGVSQNLLANPMSNLVLPEAPRLRLAEPLRGGPTGPQSPACVVPTATTKVPLSTEPPQSTQDPEPLSMAFAGAPLQTSTPIGAMGTPAPKTAFSFNTSDTQAQPSAAQEQVVPASVPTSPTTSPTVTVLASAPALAPQVATSYTPSSTTHIAQGAPHPPSRMHNSPTQNLPVPHCPPHNAHSPPRTSSSPASVNDSRGPRTTEPSTKSMMEVERKLAHRKTSKFPENPRESKQLAWERLVGEIAFQLDRRILSSIFPERVR---------LYGFTVS-HYVSVMNRLQSLG--------YN-GRVHPALTEQLVN--AYGI--DLLLSCLSQLAHDDGK----MFI--------W......................................................................................... 591
10 -6.320sp|Q9HCX4|TRPC7_HUMAN Short transient receptor potential channel 7 OS=Homo sapiens GN=TRPC7 PE=1 SV=1  ali   12  90.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................SEGLYAIAVVLSF-YILPANESFGFKFMVIF--------------IMVFVAFMIGMFNLYSYYRGAKYNPAFTTV-LF---SIFGLSEVISVVLKYDHKFIENIGYVLYGVYNVTMVV---------------------VLLNMLIAMINNSYQEIEEDA-KFAR-AKLWLSY.... 248

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.