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Query: sp|Q9Y6N5|SQRD_HUMAN Sulfide:quinone oxidoreductase, mitochondrial OS=Homo sapiens GN=SQRDL PE=1 SV=1, from H.sapiens

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVPLVAVVSGPRAQLFACLLRLGTQQVGPLQLHTGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTDDDEKISYRYLIIALGIQLDYEKIKGLPEGFAHPKIGSNYSVKTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGAIFGVKKYADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDKPGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISVIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSMYLMKADLMPFLYWNMMLRGYWGGPAFLRKLFHLGMSLast
1 -96.800[C] KOG3851 Sulfide:quinone oxidoreductase/flavo-binding protein  ali follow..  49  1.........MNRRLPGTISQCQKLLLASTRFLSTSRVNRERQECQVLVVGGGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSHRQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLNYGKIPGLVEALETPDVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCPIKCAGAPQKIAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMKLIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHVTPPMSTPDVVANCKLVTPTGFVDVDQLTLQHNKYSNVFAIGDSASSPNSKTAAAAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNLTPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIFS.... 449
2 -55.500[C] COG1252 NADH dehydrogenase, FAD-containing subunit  ali follow..  16  2..................................VASLENHQPHEVVIVGGGFGGLYAAKALAKT--NVNVTLIDKRNFHLFQPLLYQVATGTLSPADISAPLRSVLSKNTKVLLGEVNDIDPNLQQIIVGDKV-VPYDTLIVATGAKHSYFGKDNWQEDAIEMRRRIFGAFEAAEKETDEKRKALLTFVIVGGGPTGVELAGAIAELATLQEDFRNINTSETRILLLQGGDRILPHIAPELSQAATTSLREFGVVVQTKTRVTSIENDIVTF-----KQGDELQTITSKTILWAAGVKASPMGKRTGVECDRAGRAIVEPDLSIKGHQNIFVVGDLANFPLPSVAPVAIQEGEYVAKLIKKRLQGKTLPAFKYNDHGSLAMIGQNAAVVDLGLLKLKGFSAWAFWLLIHIYFLIEFDSKLLVMIQW---AWNYITRKRGSRLITG.... 426
3 -45.500[C] KOG2495 NADH-dehydrogenase (ubiquinone)  ali follow..  13  21SKILLLSTFSGGGGVLVYSDSNPLKRILHADATLDSDGNPIRKKKVVVLGSGWSGYSFLSYLNN--PNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVEPIRGLMRKGFEYKEAECVKIDASNKKIHCRSKEDMDYDILILAVGAKPNTFNTPGVEEHALNIRHSVIDCFERASNLTEEERKKILHFVVVGGGPTGVEFSAELHDFLV-VAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDGIDLKTGSMVVGVTADEIST---KERETGKIVSEPYGMVVWSTGIGSRPVIKDFMQQGQRRVLATDE-WLRVEGCDGVYALGDTATINLPATAQVASQQGKYLAKCFFRGEGRHRFQPFRYRHFGSFAPLGGEQTAALPGDWVSIGHSSQWLWYSVYASKLVSWRTRMLVISDW---TRRFVFGRDSSSI....... 582
4 -30.000[C] COG1251 NAD(P)H-nitrite reductase  ali follow..  13  2.........................................SKVRLAIIGNGMVGHRFIEDLLDKASLFDITVFCEEPRKAYRVHLSSYFSHHTAEELSLVREGFYEKHGVKVLVGRAITINRQEKVIHSSAGRTVYYDKLIMATGSYPWIPPIKGSETQ----DCFVYRTIEDLNAIEACARRSK-RGAVVGGGLLGLEAAGALKNLGV-------------ETHVIEFAPMLMAQLDQMGGEQLRRKIESMGVRVHTSKNTQEIVQQGNEAR--KTMRFADGSELEVDFIVFSTGIRPRKLATQCGLAAQRGGIVINDTC--QTSDPDIYAIGECASWNNRVYGLVGYKMAQVAVDHILGS....................................................................................... 310
5 -29.400[R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases  ali follow..  13  2...........................................TKIVIIGGVAGGASAAARARRLSEDAEIIMFERGPYVSFAN--YHIGGDIKERSNLLLQTPESFLARFNVTMNEVLRINRAAKTITVRNEYDENYDFLLLSPGAGPVIPPIPGIQNP----LTHSLRNIPDMDKIIQTLQMNKEHATVVGGGFIGLEMMEAFHHLGI-------------KTTLIEMADQVMTPVDREMAGFAHAEIRAKGIDLRLGAALKSVEYRPAATLPSAESLLSNGDTLTTDILIMAIGVRPEKLAAEAGLQGELGGIWVNEQ--MQTSDPAIYAVGDAVEE---PLAGPANRQGRMAADNMLESYQGTQGTAICKIFDLAVASTGKNEKQLKREGIAYE.................................................... 376
6 -27.600[R] KOG1336 Monodehydroascorbate/ferredoxin reductase  ali follow..  13  2........................................GRAFVYVILGGGVAAGYAALEFTRRGVDGELCIISEEPVAPYEALSKGFLLPEAPARLPKLTPKWYKDHGIELVLGRVKSVDVRRKTLLSSTGETISYKFLIIATGARLEEFGVEGSDAE----NVCYLRDLADANRLATVIQSSSNGNVVIGGGYIGMECAASLVINKI-------------NVTMVFPEAHCMALFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKV--TAVNLKDGSHLPADLVVVGIGIRPNSLFEGQLTIEKGG-IKVNSR---QSSDSSVYAIGDVATFPVKLFGDSARKSARHAVSAIMDPIKTGD.................................................................................. 336
7 -22.600[Q] KOG0405 Pyridine nucleotide-disulphide oxidoreductase  ali follow..  14  1..................MARKMLVDGEIDKVAADEANATHYDFDLFVIGAGSGGVRAARFSANH--GAKVGICELPFHPISSPKKILVYGGWEINEKVDFTWKKLLQKAVKLYEGEGRVVGPNEVEVRQIDGTSYTAKHILIATGSRAQKPNIPGHELAITSDEA--------------SLEEFPKRAIVLGGGYIAVEFAS---------------RGMGATVDLFFRKELPLRGFDDEMRALVARNLEGRGVNLHPQTSLTQLTKTDQGIKVI----SSHGEEFVADVVLFATGRSPNT-LEAVGVEDQAGAVKVDEY--SRTNIPSIWAVGDATN---INLTPVALMEATCFANTAFG........................................................................................ 362
8 -22.300[O] KOG4716 Thioredoxin reductase  ali follow..  14  2...................................APVQGSYDYDLIVIGGGSAGLACAKEAVLN--GARVACLDFQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVDKKVEYINGLGSFVDSHTLLAKLKSGERITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLF------------SLDREPGKTLVVGAGYIGLECAG---------------KGLGYEPTVMV-RSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLV-LPNAGVTVQKDKIPVDSQ--EATNVANIYAVGDIIY-GKPELTPVAVLAGRLLARRLYG........................................................................................ 351
9 -20.600[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes  ali follow..  16  2........................................TKHYDYIAIGGGSGGIASINRAAMY--GQKCALIEAKEL----PKKVMWHAAQIDTTINQFDWSKLIKNNVDVIKGFARFVDAKTIEV---NGETITADHILIATGGRPSHPEIPGVEYGIDSDGF--------------ALSALPERVAVVGAGYIAVELAG---------------NALGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTHAVPKAVVKNADGSLT---LELEDGRSETVDCLIWAIGREPST-LAAAGVKNEKGYIIVDKF--QNTNVEGIYAVGDNTG---VELTPVAVAAGRRLSERLFN........................................................................................ 327
10 -19.400[O] KOG0404 Thioredoxin reductase  ali follow..  14  17.................................SKSVLSRMIHHKVTIIGSGPAAHTAAIYLAR--AEMKPTLYEGTTDIENFPGFPESLSGSELMERMRKQSAKF---GTNIITETVSKVDLSSKTEFNEDAEPVTTDAIILATGASAKRMHLPG-EETYWQQGISACAVCDGAVPIFRNKP-----LAVIGGGDSACEEAEFLTKYASKVYILVRKDHFRASVIMQ------------------RRIEKNPNIIVLFNTVALEAKGDGKLLLRIKNTKSNVENDLEVNGLFYAIGHSPTDIVKGQVDEEETGYIKTVPGSSL-TSVPGFFAAGDVQDSRY-RQAVTSAGSGCIAALDAERYLSAQE.................................................................................. 342
11 -19.300[C] KOG1335 Dihydrolipoamide dehydrogenase  ali follow..  14  19....................RISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKAAQL--GFKTVCIEKNET----PSKALLNNSHY-VKALTGGIAHLFKQKVVHVNGYGKITGKNQVTATKADGQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGAL-----------SLKKVPEKMVVIGAGVIGVELGSVWQRL--------------ADVTAVEFLGHVGGVGIDEISKNFQRILQKQGFKFKLNTKVTGATSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT-LEELGIEDPRGRIPVNTRF--QTKIPNIYAIGDVVA---PMLAHKAEDEGIICVEGMAGG....................................................................................... 380
12 -18.300[O] COG3634 Alkyl hydroperoxide reductase, large subunit  ali follow..  13  199.............................AEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARK--GIRTGLMGERQVLDTVDIENYISVPKTEGQKLAGALKAHVSDDVDVIDSQLVPAATEGGQIETASGAVLKARSIIIATGAKWRNMNVPG-EDQYRTKGVTYCPHCDGPLFKGKRV-------AVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ------------------DKVRSLKNVDIILNAQTTEVKGDGSKVLEYRDRVSGDIHSVALAGIFVQIGLLPTHWLEGALERNRMGEIIIDAKC--ETSVKGVFAAGDCTTVPY-KQIIIATGEGAKASLSAFDYLIRTKIA................................................................................ 521
13 -17.500[ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases  ali follow..  11  120...............IGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIGAGPAGLACADVLIRN--GVAVTVYDRHPE-----LTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLL-------QYDAVFVGVGTYRSMKGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPLNVVVLGGGDTAMDCVRTALRH-----------GASNVTCAYRRDEANMPGSKKEVKNAREENVQPVALELNEQGHVCGIRFLRTRLGEPDAQVEGSEFVMPADAVIMAFGFNPHGWLESHGVTDKWGRIIADVESQYQTTNPKIFAGGDAVR---ADLVVTAMAEGRHAAQGIIDWLGVKSVKS............................................................................... 478
14 -17.400[O] COG0492 Thioredoxin reductase  ali follow..  11  2.....................................SRKEELYDITIIGGGPTGLFAAFYGGMR--QAKVKIIESMPQYPEKYIYDVAGFPKVKAQDLVNDLRQAEQFNPTIALEQVQNVTKETDDTIKTDKETHYSKAIIITAGAGAFQPRRLEVEGAKQYEGKNLQYFVNDLNAYAGK------NVLISGGGDSAVDWALMLEPVA-------------KNVTLIHRRDK-------RAHEHSVELLQKSSVNILTPFAISELSGDGEKIVTIQEVKGDAVETLDVDEVIVNFGFVSSGPIKGWGLEIEKNSIVVNTKM--ETNIPGIYAAGDICTYPGKKLIATGFGEAPTAVNNAKAFIDPTA.................................................................................. 319
15 -16.800[F] KOG1800 Ferredoxin/adrenodoxin reductase  ali follow..  10  21..................................QVIQSTTPTKRICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPV-----VRFGVAPDHPEVKNVINTFTKTAEHRLRYFGNISLGTDVSLRELR-------RYHAVLLTYGADQD--ELENEQLDNVISARKFVAWYNGLPGAENLAPDLSGRDVIVGQGNVAVDVARMLLSKTTDTTEYALEALSCSQVERVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRTE-GEMEFSVTELQQEAAVPTSSTERLPSHLILRSIGYKSSCVDTGINFDTRRGRVHILKDDATGEVDPGLYVAGWLGTGPTGVIVT-TMNGAFAVAKTICDDINTNALDT............................................................................... 413
16 -15.600[E] COG3075 Anaerobic glycerol-3-phosphate dehydrogenase  ali follow..  12  2..........................................RFDTIIMGGGLAGLLCGLQLQKH--GLRCAIVTRGQ--------LHFSSGSLDLLSHLHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVEL----QRITPLGTKICVVGISGLMDFQAHLAAASLRELDLAVELDALIPVANTCEMILMPACFGLA------------DKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIW-TRNHADIPLRPRFAVLASGFSGGLVAERNGIREPQFGVTTDQTLRPSQAIENLFTIGSVLGIAQGCGGGVCAVSALHAAQQIAQRAGGQQ.................................................................................. 419
17 -14.600[S] COG4529 Uncharacterized protein conserved in bacteria  ali follow..  13  2...........................................KSFIIIGGGASGVIIAAQLLRRAQDATVRIFEKSGRHLLNVRAGNMSAFPDEPEHLAGLLQPYHLERLFVEKVEAADIVLEDGVVVAAAGTRFSADAIILATGNESMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEMRKVEQKGGNWRDVMDGLRPHTQRLWSGLSVGQKVRFL---DVHRHRMAPAAADRIAAAVKSGQLKVMAGRLVSVRQDGEDIAVCYSPRGKGGEQMLRVAAIIDCRGGNQHFSTTRNPAPDALDLGLDVTNDLQVVNSGPFFALGPVTKGMFWEVTAVIRVQAEKLAQRLLQE....................................................................................... 442
18 -14.300[S] COG3349 Uncharacterized conserved protein  ali follow..  10  2............................................RVAIAGAGLAGLSCAKYLTDA--GHTPIVLERRDV----------LGG--LVAAWKDSDGDWYETGLHAFFGAYPNMLQLLKELGIEDRLQWKEHTLIFNQPDKPG--TLSRFDVPDIPSPFNIIASILRNNDMLTWEQKIRFAIGLLPAIVRGQKYVEEMDKYS--FSDWLKRQGVGERVASDVFIAASKALPTERLCQPIVDYITERGGEVRLNAPLKEILLNPVKGFLLRGLNGEPDEVITADYVSAMAVDPLKVMLPQP-LAPAKDWISKSDEEIVSTPIANFFLSGSYTMQRYLGSMEGAVLSGKLTAQAICESLPEDNTSN............................................................................... 464
19 -14.100[C] COG0644 Dehydrogenases (flavoproteins)  ali follow..  2........................................TEQYDVVVAGAGTAGAYASYLLAKA--GLKVALLESKSG----DQIGVKTCGDGLGLHHVERMSKYLTPNPKVFQNKIEGVSPDQKTTLIVRGEGYAWGKWLVEEAVRAGAVLYEGHTATAPIVENGSVVGVKAVERISGVAKEFRARVVIDSTGSAA------------VLRSKLIGWLVSEPL-----HPEDVSHAYREIIYSEEPLENPQYIKIYLDMVVAPFPRNATMLNVGLGIWGILKQNPRINYEKFI-----LPKFKVRGKYHIGGGFIPTRRPLKSLVGNGIVALGDAAAAVNPIHGGQALLTAELSSKVITKAFEKGDFSE............................................................................... 321
20 -13.700[Q] COG3486 Lysine/ornithine N-monooxygenase  ali follow..  12  1..............................MKPTACTTPAGEILDVVGIGIGPFNLSLAALLAEA-GYDRTVFLERKPYFSWHPGM--LLEGTTLQVPFLADLVSLVAPTSRFFGSEVTRVDVVDGCYRVNSESIHYAHNLVLGTGTQPWLACLHTLAQRFPEKVMHTADYARHFDIAGKQ------RVLVLGSGQSAAEVIQALLNRQCDDEAYFHGLAQSVKDRVVPKQGLFYKGISSKTISAIYDCLYHRSVHLRALSELRHVEANGRLDARFTHLQTGHTFSIVVDAIISGSGYRYTGLGDRVHYDDMKRLKIDAGYRVEHRGPGQIFMQNGELHT-GAPDLGLGAWRAAHIANRIAGH....................................................................................... 423
21 -13.600[I] KOG1298 Squalene monooxygenase  ali follow..  10  3FTHVCLWTLVAFVLTWTVFYLTNMKKKATDLADTVAEDQKDGAADVIIVGAGVGGSALAYALAKD--GRRVHVIERDMREFMQPGGRLMLSKLGLQDCLEDRFVQQLRRKAFLEEGTVKSLLEEKGVVKNKEGETALAPLTVVCDGCYSNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLKPSFTMV-----------------------YQISSTDVRCGFEVLPENFPSIANGEMSTFMKNTIVPQ-----------------------------------------VPPKLRKIFLKGIDEGAHIKVVPAKRMTSTLSKKKGVIVLGDAFNMRHPVVASVLLSDILILRRLLQPLSNLGDANK............................................................................... 374
22 -13.500[R] COG0579 Predicted dehydrogenase  ali follow..  11  2....................................AQNDHETVDMLLVGAGIMSATLAVLLKELDPNLKMEVVELQESGAIESSNPWNNAGTGHAGKKAVGINTMFEVSKQFWSHLVAKGTFGSPKTFIN-----PVPHLSFVRGSE----GIAYLKKRFESLTKHHAFETMVYSEDKATLAEWM---------------------------LMMPGRPADEAIAATRVEGGTDVNFGALTNQLLQHLAQQPGAQIRYNQKVTHLRRADNGWRVTKDTRNGGDREIQARFVFLGAGGGALPLLQLSGIPEGKGWLRCDNPEIVKQHQAKVYSQAEVGSPPMS........................................................................................................... 300
23 -13.200[R] COG2509 Uncharacterized FAD-dependent dehydrogenases  ali follow..  15  2........................................EQKFDVVIIGAGPAGLFAAYELVER-SNLKVLIIDEGGENYSWQLVWEVDIGSDNTPKVIKSIKNLESKGVKFLWTKALEFNKGWKVQRGKDVFTIEAKYIIVAPGRGGA-EVAKKIGLKARHGPIDVGVRVEVPAIIMEPITSIPYGFVVEERYDSYVGVNGHSM-----REKKSNNTNFALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWSRIRKSDVEPTLKHVTPGDIAMALPHRVVTNIIEGLAPEIKYYAMRVEVNELLETSIENVFAAGDGAGL--SRDIVNAAATGIMAARGILVKEGLYNLKDF.............................................................................. 467
24 -13.200[P] COG2072 Predicted flavoprotein involved in K+ transport  ali follow..  13  2........................................NQHFDVLIIGAGLSGIGTACHVTAEFPDKTIALLERREGYKFRP-----VKVLADGASIRQYIADTVDEKIHY-GLKVNTAEWSSRTVAGVHEATYTCDYLISCTGYAGYLPDFPGVHRFGGRC---------HPQHWPEDLDYSGKKVVVIGSGATAVTLVPAMAGSNPGSAAHVTRRLLLWEVRRRLGRSVDMSNFTPNYLPWDERLCAVPNGDLFKTLASGAASTDQIETFTEKGILCKSGREIEADIIVTATGLNIQMLGGMRLIVDGAEYQLPEKMTYKLENAPNLAWIGYTNA----SWTLKSDIAGAYLCRLLRHMADNG................................................................................... 417
25 -13.000[E] COG1231 Monoamine oxidase  ali follow..  11  10.FMQSGARTPTRRQLLSAIAKVGGTAALYQAMTSPNLQGARPGASVIVLGAGLAGLLAAFELRKA--GYKVQILEFQNR----------PGGRNWSLRGGDSYTELGGATQKVGYAAGNYFNPGPWRIPHHHRTLLHYELLAKSVNAKALDDAVTLEDRERLLEALKGWGMLDKDYRYAASLRTSSHRGFKRPGGGGVDGAPIPSDDLYSLHDVLDPQVWTSMGFFMNHEMQTTMFQPVGGMDMIGKAFAKQVEGLITYNAKVSKIAQDDKGVVVTADTVTGKVTEAKGDWCVCTIPLGIMAAIKAVPYSGQVGGHSFTDQEIGLISYPNAFARDLGAF----RLAGMTPEQRIEVALAQGSVIHPKSYRKEF............................................................................. 466
26 -12.600[Q] KOG1399 Flavin-containing monooxygenase  ali follow..  10  2..................................APAPSPINSQHVAVIGAGAAGLVAARELRRE--GHTVVVLDREKQ-VYKSLRTNLPRECMGYKDFPFVPRG-IEEMIRF-ETEVLRVEPVNGKVQSKTGGDEIYDAVVMCCGAEPNIAQIPGKISKFS----------------YTLFQKKLLVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPNNNLW------------------------------MHSEIDTAHEDGTIVFKNGKVVHADTIVHCTGYK-PFLETNNYMRVDDNRVPLYKHIFPPALAPGLSFIGPAMGLQFY----MFEVQSKWVAAVLSGRVT..................................................................................... 345
27 -12.500[S] COG4716 Myosin-crossreactive antigen  ali follow..  10..............................AFATPRKPEGVDQKSAYIVGTGLAGLAAAVFLIRDMAGERIHLFEELPL----------AGG--SLDGIEKPHLGFVTRGGREMWDMYRSIPSLEIPGASYLDEFYWLDRLIHKRGNRVDDDGQYTLGKQSKELIHLIMKTEESLGDQTDFFKSNFWVYWATMFAFEKWHSAVEMRRYAMRFIHHIDGLPDFTSLKFNKYNQY------DSMVKPIIAYLESHDVDIQFDTKVTDITAGKKVAKTIHMTVSGEAKAIELTVFVTNGSITESSTYGSHHEVAK.......................................................................................................................................... 306
28 -12.300[R] KOG2960 Protein involved in thiamine biosynthesis and DNA damage tolerance  ali follow..  12  57.......................STVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASV----------APGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALF.......................................................................................................................................................................................................................................................................................................................... 159
29 -11.900[D] COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division  ali follow..  12  2......................................FYTETYDVIVIGGGHAGTEAALAPARM--GFKTLLLTHNVDTL-NPAIGGIGKGQSDRVLYRQAVRTALENNLDIFQQEATDILIEQDRVTTKMGLTFRAKSVILTAGTFLAGKIHIGLENGGRAGDSASVNLSHRLRDLGLRVDRLKTGT---DEVLPVFSFMGSVDDHPQQIPCYITHTNEQTH-VIEGIGPRYCPSIEDKVMRFADRNSHQIYLE----------EGLTSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVK-PGYAIEYDYFD--KPTLETKSISGLFFAGQINGTT-----EEAAAQGLLAGINAGLYVQEKDA................................................................................. 400
30 -11.900[R] COG2907 Predicted NAD/FAD-binding protein  ali follow..  11  1........................MASVALALWERVLANVVPRQSIAVIGAGVSGLSAAWLLSH---RHDVTLYEADNRNTIIAEGVAVDTGFIVYNEPNYPLTALFRH----IGVETTETDMSFGVSLDGGALEYSSTKLLAQKRNVANPRFIKMLLDVVRFYREGRNIPADLEQGGLCRLDDYLRRQGFHLLPQAAAIWSASMRDIREFPAAALLRFFDNHGLMLPIDKRPIWRTVVGGSARYVEKLAAGVSGPILTGRPVKAIHRGPDGVRIE----DATGETRAFDHVVIGAHADQALSMLAAPSAEERELLGAFRYS------NRAVLHSDPALMPRRRGAWAS..................................................................................................... 322
31 -11.700[CR] KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases  ali follow..  10  2......................................EAESTQDIIIVGAGISGLATALGLHRL--GIRSIVLESS------EQLRATGFALVQRKLLLDALAGELPQGTIRFSSKLVHIELSGHMVHLSDGTILKTKVLVGCDGV-------------------------------KSVVGKWLGFKNPVKTSRVAIRGIAHFQTGHELGRRFFQFYGNGVRSGFISCDQNTVYWFL-THTSTDLDKKNHQKIKQFVLTKIKDLPDNIKSIL-----ETTDLDSLVMNPLMYRPPW---------------------ELLWANIAKDNVCVAGDALHPMTPDIGQSAMEDGVILARCLGEAMKAKNMKG............................................................................... 328
32 -11.700[C] KOG2415 Electron transfer flavoprotein ubiquinone oxidoreductase  ali follow..  58................................EGVNMERFAEEADVVIVGAGPAGLSAAVRLKQLAKDIRVCLVEKAAQ----IGAHTLSGACLDPGAFKE-GEQAEALGVEVYPGAAAEVLFHDDGSVKERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYG----------LYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLE--------------------------------------GGKRIAYGARALNEGGFQSIPKLT------PGGLLIGCSPGFMNVPKIKTAMKSGILAAESIFNQLTSENLQS............................................................................... 425
33 -11.500[J] KOG2311 NAD/FAD-utilizing protein possibly involved in translation  ali follow..  13  5...........RGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARC--GSRTLLLTHRVDTI-NPSFGGIGKGQIDRKLYKQNMQKEILNLLTVQEGAVEDLILTEPEVVLVDGSTVYAESVILTTG-----TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKFVVGRLKTGTPPRSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRME--TPSLETHLVQRLFFAGQINGT----TGYEAAAQGVIAGINASLRVSRKPP................................................................................. 462
34 -11.400[Q] KOG0029 Amine oxidase  ali follow..  15  1...............MESGGKTNRQLRKAICVSTDEKMKKKRSPSVIVIGGGMAGISAARTLQDA--SFQVVVLESRDRDYSFGFPVDLGASWLHGVCKENPLAAVIGR-VTKVGENFEHILEEICKVRDEQDEDMSIGHGLMVRGYRPVINTLKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLK-PKLPQWKQEAINDL----GIENKIILNFDNV----------NVEFLGVVAETSYGCSYFLNLHKATSHPVLVYMPAGQLARDIEKKSDEAAYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVP-LDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLER................................................................................... 465
35 -11.300[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases  ali follow..  2..........................................RTQVAIIGAGPAGLLLGQLLQRS--GIDAVILETRSRQYVEERIRAGVLEQGTVDTLNE-IAARIGQGAPLLFESEVSLHDLESATPSGVPQTLHCDYIAGCDGFH---------------------------GICRPAI---------------PAQRQAVFERVYPFAWLGILAEAAPAADELIYASHARGFALFSMRSPKITRLY----LQCKPDENLAEWSDARIWDELHTRLENNDGWHLKEGPILQKSVTP------------------MRSFVCETMRHGRLFLAGDAAHIVPPTGAKLAVADVRVLAQALTARYRQNDTA................................................................................ 323
36 -11.200[R] KOG2852 Possible oxidoreductase  ali follow..  2........................................SNSRNIVIVGGGITGVSCLYFLAHHRDRDTITLFESAG---IASAASGKASGFLSLEWHGPSTSSLAALSYNLHKELSDQYDGVNK---------WGYDTWSIKADENCQQPDKLPEGIEWIAPSIVENVTRLGNKKNSGQVHPYKFCHAIY---------------------------------------EEASKVANVTLVKGHVLSVDENEVEYRLIGDDYAPDEEEEITS---AEELHTIHSMEATHIIVAAGPWTPQLIPNLRISGARIHSITIDLPIKLNGNDELYVCGEFDDEPLPELSSDTKVDQDKCALIKQCANH..................................................................................... 301
37 -11.200[HC] KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis  ali follow..  11  11LRTSVCGTRILQRTCSTVVTHDVSTSCSNESNALNNSTDDGPQHDIAIVGGGMVGIALAASLASKTKHLNVAIIDNNPL--PDPRVSTVTPATIQESDLQKTVYPARLNAMDMLPSSTTDLFMRGRKLELSDGNRVYAKLVVGADGSKSRVRELAGIKTTGWNYSQNAI-TVEHTAENYTAWQRF---------------LPNGPIALLPIGDK---------FSNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSRDSLSWLTGDATISAKERFETP-------------PKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNADACALSKAIAEGIA..................................................................................... 431
38 -10.600[M] COG0562 UDP-galactopyranose mutase  ali follow..  10  2......................................TESKNYDLIVVGSGLFGLTVAERAASQLG-KKVLIVERRSH----------LGGNAYSEAEPETGIEIHKYGAHLFHTSNTRV--QHRVFAMHNGTAYQFPMGLGLINQFFGKYYSPDEARELIKEQSAEIDSSDATNLEEKAISLI--GRPLYEAFIRDYTAKQWQTDPKNLPAGNITRLPVRYNFNNRYFNDTYEGLPTDGYAAWLEKMAEHELIDVRLDTDWFDVRDD-------------LRASNPDAPVVYTGPLDL-TEVVETGDFQGTPVMNYNDADVEEAANNKVLFGGRLGTYQYLDMHM-AIGSALSMFDNKLV........................................................................................ 386
39 -10.500[H] COG1232 Protoporphyrinogen oxidase  ali follow..  12  1..................................MGGGRMGQHVETLVIGAGPAGLTTAYTLAKA--GRGVTVLEMDETY---------VGGISRTVDYK-----KFDIGGHRFFSKSQEIVDLWNEILPDDFIDRPRLSRIYYREKFYAY-GVWTAAKCMASFGWAKLTPIAAPTTFHQWVRNQFGEKLVWGMSCDEISADWASQRIKGLDLGAAIIDGVKRSLGLRGKAAEGGPKGPGMMWEACADKVMALGGDVRMGRKVDGLDKIAKLWTVAVTCADGRKEIYTADNVVSSAPIRPISVFHAGELMLPDNWIYIHDPSVKVGRSPEMIPDGVGLEYFCFEGDGLWVTSDEELVAQAKREIG..................................................................................... 387
40 -10.500[R] COG3380 Predicted NAD/FAD-dependent oxidoreductase  ali follow..  2..........................................SVPIAIIGTGIAGLSAAHALRSA--GQTVQLFDKGH-----------SGGRMASKRSE---AGTLDLGAQYFTARDRRFLDALQHWREEG-YQYRDGQLSPSPDEQPRWVGIPRMSAITRALLTDLQVVFSCRITDSEGQNHGPFNQVLIAIPAP---------QATPLLASVPKLAATAASVVMEPTWAVALGFREVLDTPVQGCFVHGSPIAWLACNRSKPGRDTTLDTWVSRQHIDMAKEDVVEHLRCAFAEVIGCAVPEAAFSIAHRWLYARPAEAHQWGALLGIYACGDWCSSGRVEGAWLS---GQEAARRLLEHL...................................................................................... 327
41 -10.500[Q] COG1233 Phytoene dehydrogenase and related proteins  ali follow..  2......................................AVTQTRDAVIIGGGHNGLVCAFYLAKA--GLKVTVCEARGV----------VGGAAVTEEFHPGFRGLRELGLTFLERPISNF-SDDKYIKLGGGLERTQEEF--AEVLPAYYAMLDEIGDILRDLAQETPPNLGDGLPGLLRALRQGGRLAFLSRQRKRDLLDLFTKSARDVLDGWFESEPVKAAFGFDAVVGNFASPDTPAITQAMAKACEAAGVEILLDAPVEAVHIDGGKAA---GVQLVDGRQIMAPIVSVNPALLYKKLVPPSALTPD.......................................................................................................................................... 317
42 -10.300[H] COG1635 Flavoprotein involved in thiazole biosynthesis  ali follow..  11  18...................................KTFLDYTDIDVALVGGGPANLVAAKYLAEA--GVKVALYEQKLS----------LGGGMWAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSVESVLIAGATSAGAEV............................................................................................................................................................................................................................................................................................................. 121
43 -10.200[E] KOG2844 Dimethylglycine dehydrogenase precursor  ali follow..  2.......................IGHRLARWRWARSYTTAVANADVVVCGGGISGTSIAYHLAKR-GKKVALVEKDSI---GCSGATGLSAGLVSSPIFDTSLQAIAQASLDLYSH--------------------------LATTCKFRYIKCGRTY-------------LASSMANEILLRRMYSRGVVHNDKVELLDCQSEMLERWPFLQ--------TEDVQLALFSPEDVALDPVALCQHLALIAKDYGALIYESNPVLEVHIGDEKQVYG---VSTKMGFIETSHFVDAAGIWAGSHKALPHQHVQTAAYPCTYSYIHTSKLPTGSVSDMTPIFNDLDGNVMLRTTSFKTL............................................................................................. 285
44 -10.200[J] COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation  ali follow..  5................................PTQRGISVVSQSYINVIGAGLAGSEAAYQIAER--GIPVKLYEMRGVKS-TDNFAELVCSAVDRDGFSQMVTEKVANLIEVVRDEITELPTDVITVIPLTSDALAEKIHALNDGAGFYFYDAAAPIIDVNTIDMSKVYLKSRYDKGEPMTKQEFMDFHEALVNAEEAPLSSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEFKT------PYAVVQLRQDNASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVR--GVMHRNSYMDSPNQTYRSKKQPNLFFAGQMTGVE-----VESAASGLVAGINAARLFKEES.................................................................................. 389
45 -9.940[H] KOG4254 Phytoene desaturase  ali follow..  12  3................................RRSFSTLPKKKWDAVVIGGGHNGLTAAAYLARG--GLSVAVLERRHV----------IGGAAVTEEIVPGFKELGRHGLKLLKRSPSS------FTPCLDGRY-----LLLGPDQDLNHSEISKFSKHDADAYPRYEKQLERFCGFMDPLLDSTPPESLQSASSFNDKLSNKMYKSAFVLNNWFESDVLKASLATDAVIGSTASVHTPSVSMAIANAAKEAGAEIFTNAEVSEILTEDSSIV--KGVLLADGTRVESSAILATPYRTYVELVPTNVLPEN.......................................................................................................................................... 336
46 -9.840[E] COG0665 Glycine/D-amino acid oxidases (deaminating)  ali follow..  2............................................RVVILGSGVVGVASAWYLNQA--GHEVTVIDREPGAALETSA----AGQISPGYAA--LRNCDTSHYMENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPA-----------------------------LAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIY----GVKCGDEVIKADAYVMAFGSYSTAMLKGIVVYPLKGY-SLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRET............................................................................... 330
47 -9.660[E] COG2303 Choline dehydrogenase and related flavoproteins  ali follow..  13  2..........................................TYDYIITGAGPAGCVLANRLSED-PDVRVLLLEDWNPLFHMPAFAKMTKGVASWGWHTVPQKHMKGRVLRYTQAKVIGGGSSINAQLYTRGNAADYDLWASEEGCA-DYRSV-----------LPYFKRAEDNQRFADDYHS-YGGPLGVSMPVSALPICDAYIRAGQELGIPYNHNGRQQAGVGFYQLTQRNRRRSSASLAYLSPIKDRPNLTVRTGARVARIMLEGRRAVGVEVVTGRGSEIIRAEVLVSSGAIGSPKLLLQSGIGPA----------------DHLRSVGVEVRHDLPGVGGNLQDHLDL............................................................................................... 295
48 -9.220[H] KOG1276 Protoporphyrinogen oxidase  ali follow..  10  35.....................SVAGGPTVGSSKIEGGGGTTITTDCVIVGGGISGLCIAQALATKHPDPNLIVTEAKDR----------VGGNIITREESDPMLTMVVD----LKDDLVLGDPTAPRFVLWNGKLRPVPSKLTDL-PFFDLMSIGGKIRAGFGALGIRPSPPGREESVEEFVRRNLGDEVVYAGDPSKLSMKAAFGKVWKLEQNG-NAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKVVMTVPSHVASGLLRPLS--------ESAANALSKLYYPPVAAV.................................................................................................................... 368

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;