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Query: sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5, from H.sapiens

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EEAGARVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQADQELLast
1 -11.500IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri]  ali follow..  12  255..................................................................................TFIQLVGKNNEESLKNDLALFQSLQESRK-----------------TEMERKSDEYAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIVQAATSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFSQLDDLITNAVARLNKFLQIISTHLNQAVLLGESVSATQAGGSVASAVFQNLSKYISEAIEKFGQLQEVIADLLASMSNSQA. 565
2 -9.080IDP93886 methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006007026 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  12  42.....................................................................................................KMVGLMKQMRDLLNAYNQKQQILNIQVNAMSNKREAIDKTAS----AAIASGACSIVSGFISGTGAGAS-LKLGDIATHIGSAVGQLSAGSGKLAEGDMTRNAELFNMASGLQSSAQTYNKNSSELADKVGEVRQNMKEFANTLTNLICQIATAAK.................................................................................................................. 195
3 -8.190IDP91318 biopolymer transport protein [Vibrio vulnificus CMCP6] VV2_0362 [Vibrio vulnificus CMCP6]  ali follow..  14  85...................................................................................................................................AWLDDAHQQLFKHLAFIKVLVAICPMLGLLGTVTGMISV-TQGSSNPKLMASGISLATLPTMAGMVAALVGMFVHARLVKLCQNREVKLEQSLRS................................................................................................................................................. 183
4 -8.170IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  8  134....................................................................................................................IQEVKVAKAKHEQEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVV-----GAIMVATGVGAAAGAAGGVMGAVSMALQEPAVQDALKEAGVNVDVLNKVVMALEIAVAVIGAIVT--------------------AAAGGIAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKAIRYGAETVDLTVNI--ATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLME. 369
5 -7.190IDP04697 gene: yopB; secreted effector protein [Yersinia pestis CO92] YPCD1.29c [Yersinia pestis CO92]  ali follow..  10  126....................................................................................................................IADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIV-----GAIMVAS----GVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQ--EAMKILGPILTEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGV--ITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSE. 371
6 -6.660IDP91469 putative secreted protein EspD [Vibrio parahaemolyticus RIMD 2210633] VPA1362 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  6  48............................................................................SSVSLNDLWRSIRESMKQVADSVSGSGQEKVATKKGLIEL------QKDSQIAMLNERASQLEEQKKAQQTQGILGKIAMAFGFIAAIIMAPFNPVMAAVMIGGMVASLVIPKIADEIMKSAGVDEKTRGIVKMG-GTMLLS---GIASSAGKAIAGGAAKAAALVKRGVDAAKTLKSFTAISSKAGG---------AEKIRKSAQPLLDKIQEFAKGGQMSAARIGQASSVGSNVTSLVSTGYGIKTAISKQMEVNQAKQDELQTRIEQVLKMLDQAMRSVAHSFETLIKTNE. 335
7 -6.410IDP95377 set238a-014 [Vibrio cholerae]  ali follow..  14  599.............................................................AEFEAFDMLRNQAVSMREENVSLKNQLRQELVKLRKQGKSSISKMRQDLKRNQSNLLMMENKLAEALSPLADMKQMAADLRQLKTRSVNLGYSVRIKAGKWDVLSFILVCFSISNAY--EVTGALSGIFGFAQGVRAATDMAAIKLVSSKVSQLVYGANLGKWTTYLGGSAYFFGIISSTL--------KVASAYDAFIQGDNKAAISLVAEGALVRVNYVGLRESGKVVYTVFKADKAVRAGIWAKNGANLLSLSIRLTLIGIALSAIQLNRTSLSQYLTWFANSQ-SLEQSNLQLARISAK....... 941
8 -5.950IDP91309 putative translocator protein PopD [Vibrio parahaemolyticus RIMD 2210633] VP1656 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  16  132..........................................................................................................................AVEANVASLQSQAAELNNSASAMIAMAVVSGVLAGATAIIGALGSFKAGKEIKTEMASNAKNAILQALGQMANSASNVARSKDDEVQATRAQAAKQKADENIGFQEGLLKELRELFRSISDSQNQAWRASIPTV................................................................................................................... 334
9 -5.740IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali follow..  7  45....................................................................................................................ICKLMLEIQKLLGKMVTLLQDYQQKQLAQS-AATAALVGGIISSALGILGSF-----AAMNNAAKGAGEIAEKASSASSKAAGAASEVANKALVKATESV--------ADVAEEASSAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVNTTAFVAVTSLAEGTKTLPTTISESVKSTHE------VNEQRAKSLENFQQGNLELYKQDVRRTQDDITTRLRDITSAVRDLLE.... 299
10 -5.690IDP04300 gene: purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit [Clostridium perfringens ATCC 13124] CPF_0672 [Clostridium perfringens ATCC 13124]  ali follow..  9  9...............................................................................................SKSDIDVMKGAGNALKEFGIPYNAYILSAHRVPEKLIETLEKIEK--EGCEVIIAGAGLAAHLPGVIAVIGVPVRAAVEGMDALLSIVSIPVATVGINNSYNAGMLAVQMLSLKYPELREKLIQFRIDMKHKFIAENGEGVEL..................................................................................................................................... 159
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.