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Query: sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3, from H.sapiens

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPEDRSDPDACTISKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQLast
1 -8.280IDP91400 ABC-type amino acid transport system, permease component [Vibrio vulnificus CMCP6] VV1_1002 [Vibrio vulnificus CMCP6]  ali follow..  13  21....................................TTMEMAILGLVFSLVLAVILANIRVFRLPILDPLSQLYISFFRGTPLLVQLFLLYYGLPQIFPIMVGLDAFSAAVILTLHFAAYMAESIRAAIIGIDRQMEASLSVGMTTSQAMRRVIL--------ATRVALPSLMNYFIDMIKSTSLAFTLGMAKAQMEASSSFRFFEAFLAVALIYWGVVLVLTRVQIWAENKLNK........................................................................................................................................................................................... 219
2 -7.970IDP00530 gene: ccmC; putative heme exporter protein C YPO2736 [Yersinia pestis CO92]  ali follow..  12  21.....................................LIPWFGGGAIICLAVGWVWGLGFAPSDYQQGDSFRIMYLHVPAAIWSMGIYMS-LTFIALVTGSW--GKPMWGTWWIWDARLTSELVLLFLYLG---VIALYNAFDDRKLAG--RAAGILVLVGVVNLPIIHFSVVWWNTLHQGSTNMQQSIDPSMRSPLRWAILGFLLCFITLTLMRLRNLILQQERHRPWVTALLRKEPRV...................................................................................................................................................................................... 245
3 -7.400IDP04089 gene: yecS; putative ABC-type amino acid transporter permease component [Salmonella typhimurium LT2] STM1952_1_222 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  21....................................FTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM--IGLSLNTAAYTSETLRAAISAIDKQWEAAASIGMTPWQTLRRAIL--------AARVALPPLSNSFISLVKDTSLAATIQFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQEREPK..................................................................................................................................................................................... 222
4 -7.180IDP04115 gene: hisM; histidine/lysine/arginine/ornithine transport protein [Salmonella typhimurium LT2] STM2352_1_235 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  25....................................ITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMGTDLLNAFFRSGLNCTVLLTLNTCAYTTEIFAGAIRSVPH-IEAARAYGFSSFKMYRCIIL--------ALRIALPAYSNEVILMLHSTALAFTATLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQ........................................................................................................................................................................................... 230
5 -6.950IDP04254 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1823 [Clostridium perfringens ATCC 13124]  ali follow..  8  96..............................................................................................................................................................................................................................NSNYSTTDKFNKPSSGSNSSSDKVESGKDSSNSDKGSKQGNNNYSTTDKFNSKAPNNQEGSSKENNKYENNDKSSGSSNKSYRSSNSGGFSFFDMLMLNNILNMFGNMFSFMFIRRPFIGIGTILLIALIIFAI.................................................................. 229
6 -6.790IDP91901 amino acid ABC transporter, permease protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002026 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  19....................................VTILISICVIFLGTILGVVLAFGQRSKFKPLVWLANLYVWIFRGTPMMVQIMIAFALMNAPTIQIGILGVDF--LIISMNSGAYVSETVRAGINAVPKQLEAAYSLGIRLKNAMRYVIL--------AVKNILPALGNEFITIIKDSSLLSAIGWNGATTVSTTTYLPLTPLLFAAFYYLIMTSILTVALKAFEKHMGQ........................................................................................................................................................................................... 223
7 -6.520IDP91947 amino acid ABC transporter, amino acid-binding protein/permease protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100001889 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  520....................................ITLALTLISFAIAIVIGIIFGMFSVSPYKSLRVISEIFVDVIRGIPLMILAAFIFWGIPNFIESITGQQSPI--IALSLNAAAYIAEIVRGGIQAVPVQMEASRSLGISYGKTMRKIIL--------ATKLMLPNFVNQFVIALKDTTIVSAILFQTGKIIIARNYQSFKMYAILAIFYLVIITLLTRLAKRLEKRIR............................................................................................................................................................................................ 721
8 -6.500IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]  ali follow..  8  1.............................................................................................................................................................................................................MKKLVTGLLALSLFLAACGQDSDQQKDSNKEKDDKAKTEQQDKKTNDSSKDKKDNKDNSKDVNKDNKDNSANDNQQQSNSNATNNDQNQTNNNQSNSGQTTNNQKSSYVAPYYGQNAAPVARQIYPFNGNKSQALQQ................................................................................ 137
9 -6.390IDP91473 type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] VPA1342 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  16  40....................................VLVLLSAVFFICFTGFVKYSIVLNIIKNA--QIPPAIVVNLLA---ALMALNAVVGSLIYDLYKGFELGLKLYIVFVSIDFL--IAVILSGVGMTMLSPTVISTPVKL--------AVFYFSDSW..................................................................................................................................................................................................................................................................... 235
10 -6.260IDP00186 putative membrane protein YPO0695 [Yersinia pestis CO92]  ali follow..  9  3.........................................VIRLSLIVLIV--SQLLFVCYSDIRHRIISNKFIISISFNAIIFSLVIVALFIGYIIFHFNVMGGGDVKLITVLLLALVMGGVVMVVGLLINRVDIQKRGVPYAVAITAGFLSSVLI........................................................................................................................................................................................................................................................................ 140
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.