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Query: sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1, from H.sapiens

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRIALRYYNQSEAGSHTWQTMYGCDLGPDGRLLRGHNQLAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGKGGSYSQAASSDSAQGSDVSLTALast
1 -26.300CPX_91747_91753 Complex of Q8WLQ7_HUMAN with TSST_STAAU [Undefined organism]  ali follow..  8  1.............................................................................................LEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPSAEYWNSQKDLLEQRRAEVDTYCRHNYGVVXMNKKL------------LMNFFIVSPLLLATTATDFTPVPLSSNQIIKTAKASTNDNIK---DLLDWYSSGSDTFTNSEVLDSLGSMRIKNTDGSISLIIFPSPYYSPA--------------------------FTKGEKVDLNTKRTKKSQHTSEGTYIHFQI 205
2 -22.800IDP90968 [synthetic construct]  ali follow..  19  316....................................................................................................................................................................................QPREPQVYTLRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE-NNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQFSCSVMHEALHNHYTQKSLSLSPGKSEKDEL................................................... 427
3 -17.200IDP06410 K14 [Human herpesvirus 8] YP_001129432 [Human herpesvirus 8]  ali follow..  16  121...............................................................................................................................................................................CTACLEVTSPPTGHVQVNSTEDADTVTCLATG-RPPP-NVTWAAPWNNA---SSTQEQFTDSDGLTVAWRTVRLPRTTPSEGICLITWGNESISIPASIQGPLAHDLPAAQGTLAGVAITLVGLFGIFALHHCRRKQGGASPTSDDMDPLSTQ.......... 271
4 -15.600IDP90144 bifunctional IL-1-beta-inhibitor/prevents febrile response in VAC-mouse intranasal model [Monkeypox virus] MPXV_ZAI1979_005_189.5 [Monkeypox virus]  ali follow..  14  31...............................................................................................................................................................................................VTSIGSNLTITCRVSL--TTDADVFWISNGMYYEEEDEDGDGRISVDKRRVITSWLPVKEEDATTFTCMAFTISISKTVTVSIT............................................................... 126
5 -15.100IDP90177 gene: CPXV024 CDS; CPXV024 protein AAM13471.1 [Cowpox virus (Brighton Red)]  ali follow..  16  20.......................................................................................................................................................................................ADETKCPNLDIVTSSGEFHCSGVEHMPDFSYMYWLAKDMKSDEEDETVRTTDGGITTLRKVLHVDTNKFAHYRFTCVLTTIDGVSKKNIWLK............................................................... 126
6 -14.700IDP90109 interleukin-18-binding protein [Monkeypox virus] MPXV_ZAI1979_005_014 [Monkeypox virus]  ali follow..  13  20.......................................................................................................................................................................................AVETKCPNLAIVTSSGEFHCSGVERMPGFSYMYWLANDMKSDEDTKFIEHLGDGGGITTLRKVLDTNKFAHYRFTCVLITLDGVSKKNIWLK............................................................... 126
7 -11.800IDP91747 Q8WLQ7_HUMAN [Homo sapiens]  ali follow..  12  1.............................................................................................LEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPSAEYWNSQKDLLEQRRAEVDTYCRHNYGVV...................................................................................................................................................................... 79
8 -11.700IDP06418 gene: K1; K1 [Human herpesvirus 8] YP_001129350 [Human herpesvirus 8]  ali follow..  10  14.....................................................................................................................................................................................RGLLSLSLQSSPNISTPYTLTCPSNT----SLPTSWYCNDTRLLRVTQGTLTVDTLICNFSCVGQ-TVTCGQHVTLYCSTSGNN-----VTVWHLPNGQNETVSQTKYYNFTL--------------MNQTEG----CYACSNGLSSRLSNRLCFSA 173
9 -11.200IDP90145 IFN-alpha/beta-receptor-like secreted glycoprotein [Monkeypox virus] MPXV_ZAI1979_005_192 [Monkeypox virus]  ali follow..  13  162...............................................................................................................................................................................................GTYDKYGIDLYCGILYAKHYN-NITWYKDNKEINIDLIIHNPELEDSGRYDCYVHINVTIGEPANITCSAVSTSLFVDDLIEWENPSGWIIGLDFGVYSILTSRGGITEATLYFENVTEEYIGNT-----RGHNYYFDKTLTTTVVL 351
10 -10.900IDP90143 bifunctional IL-1-beta-inhibitor/prevents febrile response in VAC-mouse intranasal model [Monkeypox virus] MPXV_ZAI1979_005_189 [Monkeypox virus]  ali follow..  8  125........................................................................................................................................................................................DLISYPQIVNERSTGEMVCPNINAFISS-DIIWSGHRRLRNKRLKQRT-----PGIITIE---DVRKNDAGYYTCVLEYI.......................................................................... 199
11 -10.700IDP90198 gene: CPXV209; CPXV209 protein AAM13648.1 [Cowpox virus (Brighton Red)]  ali follow..  14  212...............................................................................................................................................................................KLEVRDRMIPPTMQLPDGSIGSNLTIACRVSL--TTDADVFWISNGMYYEEDISVANKIYTTDKRRVITSRLPVKEEDATTFTCMAFTISISKTVTIS................................................................. 324
12 -9.710IDP05773 soluble interferon-alpha/beta receptor [Ectromelia virus] AAX23681 [Ectromelia virus]  ali follow..  13  151.................................................................................................................................................................................RSHIRKPPSCIPETYELGKYGIDLYCGILYAKH-YNNITWYKNNQELIIDLIIHNPELEDSGRYDCYVHINVTIGEPANITCTAVSTSLLVDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNT-----RGHNYYFDKTLTTTVVL 357
13 -9.250IDP91754 TVB1_HUMAN [Homo sapiens]  ali follow..  13  32................................................................................................................................................................................................TEMGQEVTLRCKPIS---GHNSLFWYRNVPIDDSGMPEDRFSAKMPNASFSTLKIQSEPRDSAVYFCASSLA.......................................................................... 116
14 -9.180IDP05418 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1561 [Bacillus anthracis str. Ames]  ali follow..  16  28.....................................................................................................................................................................................VFASVNDLAQPIASAKVIEVELNDDYFNPNVITI---PINESTTLLLKNKGKSEHTFTIKKLGIDVVVESGKEKNLICRYHLKGMEGKVIVK................................................................. 129
15 -9.180IDP90211 gene: m128L; m128L MYXV_gp132 [Myxoma virus (strain Lausanne)]  ali follow..  12  18.........................................................................................................................................................................................EVTVTPYTVCNKTVTLECNLDALIYKDINVKWLFDTMYD-----------ISNKTNGSSITFDFANNLTGNYTCEAYSEFNSVKHVIALTFVHQWFSREEIQFILSLLTIYIILLWGNVCTITFKINNVSK...................... 141
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.