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Query: sp|Q9Y6N5|SQRD_HUMAN Sulfide:quinone oxidoreductase, mitochondrial OS=Homo sapiens GN=SQRDL PE=1 SV=1, from H.sapiens

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVPLVAVVSGPRAQLFACLLRLGTQQVGPLQLHTGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTDDDEKISYRYLIIALGIQLDYEKIKGLPEGFAHPKIGSNYSVKTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGAIFGVKKYADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDKPGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISVIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSMYLMKADLMPFLYWNMMLRGYWGGPAFLRKLFHLGMSLast
1 -57.700IDP01857 gene: ndh; NADH dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT1034c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  2...........................................RKIIVIGAGFVGINFLNKIAKQSNKYHIILFDKNNHHVFQPMLYQTATAFIPLNNVVVPIRKLFTQNIEFKMQEVIDILPEEQLVKTAANILYSYDYLIVATGIEYDYLGNDQWREDAQKIKSHILSQFELAEVAQTEEKRYHLSFIIIGAGATGVEITGALLDLLDFLKTYHNFSIDDISILLIEGGENILSAFPKELSNHAYDSLKARRVNIHLKEPVTNILDSRVTT---------EKDSYRGATIIWSTILKGKGIGNWMSSQIEKGKIAVLD-NLTHRDFKNIYFAGDISYIPLPGLAAVAKQQGKYIAKTIIKRDKNKAYNDFKYKDLGTMAIIKKHEAIANIFGMKFKGKLGWFIWGGVHITFLISIRNKFVVSFNW---LSYYICKRIGSIEFIK.... 408
2 -29.000IDP93938 nitrite reductase [NAD(P)H] large subunit [Yersinia enterocolitica subsp. palearctica Y11] YP_006006742 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  13  2.........................................SKVKLAIIGNGMVGHRFIEDLLDKADQFEITVFCEEPRIAYRVHLSSYFSHHTAEELSLVREGFYEKHGVKVLVGRAITINRKEKVIHSNSGRTLYYDKLIMATGSYPWIPPIKGSEGQ----DCFVYRTIEDLNAIEACTRRSK-RGAVIGGGLLGLEAAGALKSLGV-------------ETHVIEFAPVLMAQLDPMGGDQLRQKIERMGVRVHTGKNTQEIVHSGQNSR--KTMLFADGTQLEVDFIVFSTGIRPQKLAHQCGLAARRGGIAINDYC--QTSDPDVYAIGECASWQERTFGLVGYKMAQVTADHLLGR....................................................................................... 310
3 -28.900IDP00411 gene: nirB; nitrite reductase YPO0161 [Yersinia pestis CO92]  ali follow..  13  2.........................................SKIKIAIIGNGMVGHRFIEDLLDKADKFDITVFCEEPRIAYRVHLSSYFSHHTAEELSLVREGFYEKQGVKVLVGRAITINRAEKVIHSNSGRSLYYDKLVMATGSYPWIPPIKGSEGQ----DCFVYRTIEDLNAIEACTRRSK-RGAVIGGGLLGLEAAGALKSLGV-------------ETHVIEFAPVLMAQLDPMGGDQLRQKIERMGVRVHTGKNTQEIVHSGQNSR--KTMLFADGTQLEVDFIVFSTGIRPQKLANQCGLAARRGGIAINDYC--QTSDPDVYAIGECASWQERTFGLVGYKMAQVAADHLLGR....................................................................................... 310
4 -28.700IDP01665 putative pyridine nucleotide-disulphide oxidoreductase [Yersinia pestis CO92] YPO3001 [Yersinia pestis CO92]  ali follow..  14  2..........................................GKTIVIVGGVAGGASAAARLRRLNEYDNIIILERGEYISFAN--YYIGGVITERDKLLIQTPEKMKDRFNITENEVVDIDSASKTITVINHKVIQYDTLILSPGARPFIPDIAGLS---VNGPVFTLRNMSDTDNIKAYLISATEAVTVIGGGFIGLEMAENLVSSGL-------------KVTIIELSNQILSPLDYEMAAIVEKHLKDNGIDVIKNDAVVQFDESAHQIHLK------SGKIITTDMVILAIGVEPEDLAKKAHLDGIRGSILVNEK--LQTSVADIYAIGDAIQV---PLAWPANRQGRLLADIINVRYHGTLGTAIAKVLDLSAACTGNNERLLKRLAIPYQ.................................................... 357
5 -22.100IDP02406 thioredoxin reductase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2768 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  2.........................................KYIDCAVIGAGPAGLNASLVLGRA--RKQIALFDNNTNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKSVHYYEKTVVMITKQSTEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPY---------DGWELKDQPLIIISENED------HTLHMTKLVYNW------STDLVIATNGN--------ELSQTIMDELSNKNIPVITESIRTLQGEGGYL----KKVEFHSGLRIERAGGFIVPTFFRNQFIEQLGCEQSNGTFVIDDF--GRTSEKNIYLAGETTT-QGPSSLIIAASQGNKAAIAINSDITDER.................................................................................. 300
6 -21.500IDP01894 pyridine nucleotide-disulfide oxidoreductase [Salmonella typhimurium LT2] STM0564 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  2.........................................TQYQALIIGFGKAGKTLAATLAKT--GWRVAIIEQSASMF--PTKTLVHDAERRKAAVVNFLRDADLDNVDVIEGRAEFIDNHTLRVFQADGERLRGEKIFINTGAESVIPAITGLTTTAGVFDSTGLLS----------LSQRPARLGILGGGYIGLEFASMFANF--------------TKVTIFEAAPQFLPREDRDIAQAITRILQEKGVELILNANVQAVSSKEGAVQVE-----TPEGAHLVDALLVASGRKPAT-LQNAGVANERGGIIVDDY---RTTADNIWAMGDVTG---LQFTYISLDDFRIVRDGLL......................................................................................... 315
7 -21.300IDP92095 glutathione reductase, putative [Toxoplasma gondii ME49] TGME49_046920 [Toxoplasma gondii ME49]  ali follow..  13  1...............................MAAKMAAATRRHFDLFVIGGGSGGLACARRAATY--NVRVGLADGNRL----PKKVMWCVAFTVKEQPTFCWRTLKNSGVTFFPAYARFAKPEAKTDG-GNEETVTADHVLIASGGRPAKAGIEGEEHTINSDGF--------------ELEEMPQKVALLGAGYIAVEFAG---------------AAMKCETHLFVRHERALRKFDDMISMRVDEFMRKAGVQIHPHSVAKAVRQEADKSLT---ELTNGESFRGFDSVIVSVGRVPEV-LDVVGVKRHGGYIVADE--FQNTSVEQIYAVGDVSG---IELTPVAIAAGRRLADRLFGGLCNAKLD................................................................................ 358
8 -20.800IDP01939 gene: udhA; soluble pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2] STM4126 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  2......................................PHSWDYDAVVIGSGPGGEGAAMGLVKQ--GARVAVIERYHN----PSKALRHAVSRSFADILNHADNVINQHCEILQGNAHFIDEHTLALECHDGETLTAEKFVIACGSRPYHPNDVDFSHPRIYDSDSIL-----------SLHHEPRHVIIYGAGVIGCEYASI--------------RGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMH----LKSGKKLKADCLLYANGRTGNT-LENIGLEDSRGQLKVNSMY--QTALPHVYAVGDVIG---PSLASAAYDQGRIAAQALVK........................................................................................ 335
9 -20.400IDP02152 gene: gor; glutathione reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT0955c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  2.......................................SNNHFDVISLGGGSGGIASAVQAAKF--GKKVAIIEKREL----PKKAMWYGANLDVEVKGFNWAKLKKWNITHFNNWGKFKD--NKTIVLDDGAELTADHIFISPGAYIVPKNIEGAELGITSDEF--------------ELEETPKKAVIVGGGYIGVEIAG---------------NAHGTDTTIMVRRDKPLMEFDNCISDALVECMQMTDLNIMNHTNITKVEKTGSTLKIT---TDTDKVLEDVDTLIWATGRAPNT-IENTDIRTDKGVIPANEW--SETNVAGVYSLGDASG---PQLTPVAIKTGRYLARRLFN........................................................................................ 330
10 -20.000IDP90913 thioredoxin reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC1182 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  2......................................SNVKHSKLLILGSGPAGYTAAVYAAR--ANLKPVLVTGMQ-----PGDAEGLTGPALMERMKEHAERF---DTEIVFDHINSVDLSSRPFRLGDSQEYTCDALIISTGASAKYLGLES-EEAFKGRGVSACATCDGFFYRNQKV-------AVVGGGNTAVEEALYLSNIASEVHLVHRRDSFRSEKILI---------------DRLMDKVANGNIVLHTHRTLDEVLGDEMGVVRLKDTQSDMTENLDVMGVFIAIGHQPNSQIFEGQLEMKNGYIVVKSGNATQTSIEGVFAAGDVMDHNY-RQAITSAGTGCMAALDAERYLDSQG.................................................................................. 317
11 -19.900IDP02353 gene: trxB; thioredoxin reductase [Yersinia pestis CO92] YPO1374 [Yersinia pestis CO92]  ali follow..  17  2......................................STAKHSKLIILGSGPAGYTAAVYAAR--ANLKPVLITGME-----PGDPEGLTGPALMERMHEHAEKF---QTEIIFDHISSVDLQNRPFRLGDGAEYTCDALIIATGASARYLGMAS-EEAFKGKGVSACATCDGFFYRNQKV-------AVVGGGNTAVEEALYLANIAAEVHLIHRRDTFRSEKILI---------------DRLMEKVKNGNIVLHTDRTLDEVLGDDMGVVRLKSTHSDETEELAVAGVFIAIGHSPNTGIFSDQLALENGYIKVQSGL-TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDGLANDK............................................................................... 320
12 -19.600IDP02383 gene: trxB; thioredoxin reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT0489c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  2........................................ANHHKLIILGSGPAGYTAAIYAAR--ANLKPVIITGMQ-----PGEPDGIMGPELMEKLQKQAERF---DTQIVYDTINAVDLQNKPFKLGEVEQYTCDTLIIATGATAKYLGLES-EEKFMGKGVSACATCDGFFYKNKDV-------AVVGGGNTAVEEALFLSNIAKSVTLIHRRDTLRSEKILI---------------DKLMEKAQHGNINIIWNTTLEEVLGDDMGVLRIKNIKTNEESQMGVAGVFIAIGHTPNTSIFAGQLEMENGYIKVKSGLAGQTNIKGVFAAGDVADHVY-KQAVTSAGTGCMAALDAEKYLDNLD.................................................................................. 315
13 -19.300IDP91813 gene: lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [Escherichia coli str. K-12 substr. MG1655] b0116 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  13  2......................................STEIKTQVVVLGAGPAGYSAAFRCADL--GLETVIVERYNT----PSKALLHVAKV-INQLTGGLAGMAKGKVKVVNGLGKFTGANTLEVEGENGKTINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDAL-----------ELKEVPERLLVMGGGIIGLEMGTVYHAL--------------SQIDVVEMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNG-AGKAGVEDDRGFIRVDKQL--RTNVPHIFAIGDIVG---PMLAHKGVHEGHVAAEVIAGK....................................................................................... 338
14 -19.200IDP01119 gene: ahpF; alkyl hydroperoxide reductase, F subunit BA_0344 [Bacillus anthracis str. Ames]  ali follow..  14  172......TVFLNGESFGSGRMTLEEILAKMGNGPDASELSDKDPYDVLVVGGGPAGASAAIYAARK--GIRTGIVAERQVMDTMGIENFISVKRTEGPKLVASLEEHVKEDIDVMNLQRAKRLEKKEEVELENGAILKSKSVIVSTGARWRNVGVPG-EAEFKNKGVAYCPHCDGPLFTGKDV-------AVIGGGNSGIEAAIDLAGIVKHVTVLEFMPELKADAVLQ------------------ERLNSLPNVTVLKNVQTKEITGTDKVNGISIDRETEEVHHVELQGVFVQIGLVPNTDWLGETVERVRGEIVTDKHG--ATNVPGVFAAGDCTNNPY-KQIIISMGSGANAALGAFDYLIRN................................................................................... 508
15 -19.200IDP02696 gene: acoL; dihydrolipoamide dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA2773 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  3............................................KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEADL----PTKSLLESAEV-VTQLVQGIQYLMKKKIKVIQGKAKFETDHRVRVTYGDKEIVDGEQFIIATGSEPTELPFAPFDGKWILNSTHAM-----------SLKNIPKSLLIVGGGVIGCEFASIYSRL--------------TKVTIVEMAPQLLPGEDEDIAHILRGKLENDGVKIFTGATLKGLNSYKKQALFE---YEGGIQEVNPEFVLVSVGRKPRV-LEKAGIQYSNKGISVNEHM--QTNVSHIYAAGDVIG---IQLAHVAFHEGTTAALYASGE....................................................................................... 331
16 -18.800IDP00740 gene: pdhD; dihydrolipoamide dehydrogenase SACOL1105 [Staphylococcus aureus subsp. aureus COL]  ali follow..  13  7........................................PIETDTIVIGAGPGGYVAAIRAAQL--GQKVTIVEKGNL----PSKALLHASHR-VNKLTGGVEGLLKGKVNIVKGEAYFVDNNSLRVMDEKSQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGAL------------NLQEVPGKLVVVGGGYIGSELGTAFANF--------------SEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVT--EAKGEEKTIEADYVLVTVGRRPNT-LEELGVKADRGLLEVDKQS--RTSISNIYAIGDIVP---LPLAHKASYEAKVAAEAIDGQ....................................................................................... 339
17 -18.800IDP00744 gene: lpdA; 2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase SACOL1563 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  2.......................................SEKQYDLVVLGGGTAGYVAAIRASQL--GKKVAIVERQLL----PTKSLLKSAEVDVKDANVNFENMLARKEDIINQMYQGVK-QHNHIDIYNGDLLPNQFVLIATGSSPAELPFLSFDHDKILSSDDIL-----------SLKTLPSSIGIIGGGVIGMEFASLMIDL--------------VDVTVIEAGERILPTESKQASQLLKKSLSARGVKFYEGIKLSENDINVNEDGVT---FEISSDIIKVDKVLLSIGRKPNT-LNNTKIKSTSGHILTNEFQ--QTEDKHIYAAGDCIG---LQLAHVGSKEGVVAVDHMFE........................................................................................ 341
18 -18.400IDP02664 gene: trxB; thioredoxin reductase [Bacillus anthracis str. `Ames Ancestor`] GBAA5387 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  2......................................SEEKIYDVIIIGAGPAGMTAAVYTSR--ANLSTLMLERGIPGGQMANTEDVENSILGPDLSNKMFEHAKKFGAEYAYGDVKEVIDGKEKTIIAGKKEYKARAIIVASGAEYKKIGVPG-ETELGGRGVSYCAVCDGAFFKGKEL-------VVIGGGDSAVEEGVFLTRFASKVTIVHRRDTLRAQKILQ------------------DRAFQNEKVDFIWNHTIKEINEANGKVVTLVDVNSGEEKEVKTDGVFVYIGMLPSKPFVELGITNENGYLETNERM--ETKVPGIFAAGDVREKML-RQIVTATGDGSIAAQSAQHYVEELL.................................................................................. 309
19 -18.200IDP06260 thioredoxin reductase [Streptococcus pneumoniae TIGR4] NP_345912 [Streptococcus pneumoniae TIGR4]  ali follow..  13  3............................................DTIIIGAGPAGMTAALYAAR--SNLKVALIEGGLPGGQMNNTSDIENNISGPELAEKMFEPLENLGVEHIYGYVENVEDHGDFKKVTDDQTYETRTVIVATGSKHRPLGVPG-EEELNSRGVSYCAVCDGAFFRDQDL-------LVVGGGDSAVEEALFLTRFAKTVTIVHRRDQLRAQKVLQ------------------DRAFANEKISFIWDSVVREIKGENRVESVVENVKTGQVTEQAFGGVFIYVGLDPSDFVKELNIQDQAGWIVTDNHM--KTAVDGIFAVGDVRLKDL-RQVTTAVGDGAIAGQEAYKFITEHS.................................................................................. 303
20 -18.000IDP00653 gene: ahpF; alkyl hydroperoxide reductase, subunit F SACOL0451 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  192.............................GSTADASEFENKEPYDVLIVGGGPASGSAAIYTARK--GLRTGIVADRQVNDTAGIENFITVKETTGSEFSSNLAAHIDQDIDAMTGIATDIEKTDEKVTLENGAVLESKTVIIATGAGWRKLNIPG-EEQLINKGVAFCPHCDGPLFENKDV-------AVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQ------------------DRLRSLSNVDIKTNAKTTEVVGEDHVTGIREDMNTGEEHLLNLDGIFVQIGLLPTSWLNDAVELNERGEIVIDRNN--NTNVPGIFAAGDVTDQKN-KQIIISMGAGANAALNAFDYIIRN................................................................................... 507
21 -17.900IDP90832 gene: trxB; thioredoxin-disulfide reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0146c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  3............................................DVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKGM----PGVAQVMDGISFMAPWSEQCMRF---GLKHEMVGVEQILKNSDTIKLEGGKTELAKAVIVCTGSAPKKAGFKG-EDEFFGKGVSTCATCDGFFYKNKEV-------AVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTV------------------EKVKKNEKIELITSASVDEVYGDKMGVAGVVKLKDGSIRDLNVPGIFTFVGLNVNEILKQDDSKEEGGQVSVDLKM--QTSVAGLFAAGDLRKDAP-KQVICAAGDGAVAALSAMAYIES.................................................................................... 310
22 -17.200IDP00346 hypothetical protein lmo0489 lmo0489 [Listeria monocytogenes EGD-e]  ali follow..  17  378.....................................TKVTRPTNVVVIGGGTAGLEAACTAAEV--GCNTTLIEANEQ----------TGGLARAIANL-PDKSRIADFPNYLANRAEKLT--GTKADTALIDTFNPDVVVNATGSKPLLPPIKGLLDVIDKEGSKVHSIFGLISNIDDFTEFSNKKVAVIGGGAVGLD-----------VVEYFSERG--SDVTIVEMMPLLGKDLDMITRLSMMDIIEKNHVDVQTETALTEVAADHFKV-----KHDGVDAEIPFDYGFVCLGMRPERPLMEE-------------AAYGKEKQIEIVNIGDSAA---TRKILEGVREGRNILTTL.......................................................................................... 658
23 -17.200IDP04396 pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis str. Sterne] BAS4797 [Bacillus anthracis str. Sterne]  ali follow..  12  2...................................KVAENQKVYDITIIGGGPTGLFTAFYGGMR--QASVKIIESLPQYPEKYIYDVAGFPKVRAQELVDNLEQMKKFDPTVCLEEAVDTLEKQADKLVTNKQTHYSKSVIITAGNGAFQPRRLELEGTAKYEKKNLHYFVDDMNKFAGK------RVVVFGGGDSAVDWTMMLEPIA-------------DKVTIVHRRDK-------RAHEHSVESLMNSRAEVSTPYVPVELIGDDKIEQVVQHVKTEEKIIIDVDDVIVNYGFVSSGPIKNWGLDIQKNSILVNSKM--ETNIPGIYAAGDICTYEGKKLIACGFGEAPTAVNNAKAYFDPNA.................................................................................. 320
24 -16.200IDP00481 gene: gltD; glutamate synthase subunit beta YPO3558 [Yersinia pestis CO92]  ali follow..  12  119...............IGNIERYISDKAIAMGWKPDMSHVHPTGKRVAVIGAGPAGLACADVLARN--GVQAVVFDRHPE-----LTFGIPAFKLEKEVMIKRRKIFSEMGIEFQLNTEVGKDITMEALL-------DYDAVFLGVGTYQS-EEANGVYDALPFLIANTKQLMGYEATAHEPYINMQGKRVVLGGGDTAMDCVRSSIRQ-----------GATDVVCAYRRDEVNMPGSKREVKNAREEGVEPLSIEVNSNGKVCGVRMVRTQLGAPDAQIPGSEHVLPADAVVMAFGFRPHSWLAAHDVKDKQGRVIAPESTDNQTSNPKIFAGGDIVR---SDLVVTAIAEGRKAADGIMNYLE..................................................................................... 471
25 -16.200IDP00343 hypothetical protein lmo2235 lmo2235 [Listeria monocytogenes EGD-e]  ali follow..  11  374.....................................LPKTPSKKVVVVGGGVGGLYAGWMAGSR--GHDVTVYEASDM----------IGGQMRLAAYP-PGKGDLTNMVRSYIKKCEQFDVENTPVTLELIQEVAPDAVIIATGATPLVLPIPGIEDA----------GLIHAVDLLDGKEKCGQKVLVVGGGMVGSE-----------TAAFLGEAG--HDVTVVELRDEVGADVISEHRKFLMHDFDEYKIKSVTNAKVTSFFEDGVTYSLADN---KEQRIDGFDSVVLAMGSRAYNPLEEA-----------------KAIVPETYVIGDAVR---ARRALDATKEALDAVLQL.......................................................................................... 641
26 -15.900IDP91263 pyridine nucleotide-disulfide oxidoreductase family protein [Bacillus anthracis str. Sterne] NT05BA0394 [Bacillus anthracis str. Sterne]  ali follow..  12  2......................................NREELFDVTVIGGGPAGLYSAFYSGLR--EMKTKIIEFQPQYPEKMIWDIGGLLPVTGEKLIEQLQQGLTFQPEVVLNTKIESIIRNKTLKTSTGEEHFSKTVIVATGSGILNPQKLSIEGAERFEVSNLNYTVKSLKRFKNK------TVIISGGGNSAIDWANELEPIAKKVYLTYRKEELSGH------------------EAQVKQLMNSSAECFFNTSITTLIAGDNHEAIEYTNHETGEVSQLAIDEVIINHGYERDTLLENSELDIDNYYIAGNANS--ESSVDGLYAAGDILKHEGKHLIAGAFQDAGNAVNKAKQFIQPDA.................................................................................. 323
27 -15.200IDP00444 putative oxidoreductase Fe-S binding subunit YPO0342 [Yersinia pestis CO92]  ali follow..  11  317...............IGQIERHITETALATGWRPDLSQVKPSGKRVAIIGAGPAGLGCADILVRN--GITPVVFDRYPE-----LTFGIPAFKLEKSVMTRRREIFTEMGVEFCLNTEIGRDITMENLL-------DFDALFLGVGTYRSMRGLENEDAQGVYDALPFLIGNTQHLMAHPYVSMQDQRVVVLGGGDTAMDCVRTSLRQ-----------GASRVVCAYRRDEKNMPGSKREVKNAREENLQPMSIVVDESGQVTGIKMVRTEMGQADAQITGSEHLIPADAVIMAFGFSPHRWLAEHNVVDKHGRVVAPTISGYPTSNPKIFAGGDIVR---ADLIVTAIAEGRKAAESIAYYLNV.................................................................................... 670
28 -15.000IDP05177 gene: mqo; malate:quinone-oxidoreductase [Bacillus anthracis str. Ames] BA_2974 [Bacillus anthracis str. Ames]  ali follow..  9  2.....................................SNMQQKTDVILIGAGIMSATLGSLLKELAPEWEIKVFEKLASAGEESSNEWNNAGTGHSALCELNYTSEKSDGSIDISKAVKVNEVKSKLIRNPQDFIMPLPHMSLVQGEK----NVEFLKNRFEALSKNPLFQGMEFSDAPETLKK---------------------------WLPLIMEGRTSNEPMAATKIDSGTDVNFGALTRMLFDYLKTKDVELNYKHSVENIKKNGLWEVKVHDMNSGKIEHHTAKFVFIGGGGGSLPLLQKTGIPESKHFMVCKNQKVVEQHHAKVYGKAKVGAPPM............................................................................................................ 298
29 -15.000IDP01438 2,4-dienoyl-CoA reductase VC1993 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  368......................................KPAQSKKIAVVGAGPAGLAFATTASER--GHQVDLFERNDR----------IGGQFRLAMQI-PGKEEFRETIRYFANRIDQTGVKLHLGCEVQFSDLGYDEVVIATGVTPRKIALAGLSES----------KVVDYQTLIREKTPVGQKVAIVGAGGIGVDVASMLTEPKDQTLDDWLYETSEREVWLLQRRKGAVGKGPGKTTGIHKRTLEKRGVHLVGGVQYQKIDEQGLHI-----ERDGKSELIDADSVVICAGQESVRPFEAQ-----------------AELGDKLHVIGGADVAG-ELDAARAIRQGVELAVRL.......................................................................................... 666
30 -14.700IDP02006 gene: glpB; anaerobic glycerol-3-phosphate dehydrogenase subunit B [Salmonella typhimurium LT2] STM2285 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  2..........................................KFDTVIMGGGLAGLLCGLQLQQH--GLRCAIVTRGQ--------LHFSSGSLDLLSAEHPYSRLGAQKVLTLAQQAQTLLNASGAQLYGDVQQ----QRVTPLGTRICVVGVSGLLDFQAHL-ARLLDNEEKWPLLYDALSPIATNCDMIIMPAC----------FGLANDTLWRWLNERLPCALTLLPTLPPSVLGIRLHNQLQRQFVRQGGIWMPGDEVKKVTCRRGTVS---WTRNHADIPLRPRFAVLASGFSSGLVAEREGIREPQFGVVTDDASLAGNTVENLYAIGSVLAIAEGCGGGVCAVSALQAAHHIAERAGEQQ.................................................................................. 419
31 -14.600IDP01051 gene: fadH; 2,4-dieonyl-CoA reductase STM3219 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  369.....................................TPAIRKKNLAVVGAGPAGLAFAINAASR--GHHVTLFDAQSE----------IGGQFTIARQI-PGKEEFYETLRYYRRMIDVTGVTLKLNQRVNAEDLPFDEAILACGIVPRRPPIDGIDHP----------KALTYLEVLRDKAPVGKRVAIIGCGGIGFDTA-HGESTSQNIAEFCTEWGIRQIVMLQRKTSKPGEGLGKTTGWIHRATLLARGVKMIPAVSYQKIDDDGLHLLIG-----GEPQLLEVDHVVICAGQEPRRELADP-----------------RAAGKTVHLIGGCDVAM-ELDARRAIAQGTRLALEI.......................................................................................... 672
32 -14.600IDP01003 gene: aegA; putative oxidoreductase Fe-S binding subunit STM2479 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  300...............IGNIERYISDRALSKGWRPDLSDVQKSDKRVAIIGAGPAGLACADVLARH--GVSATVYDRHPE-----LTFGIPAFKLDKSLLARRREIFSAMGIRFELNCEVGKDISLETLL-------SYDAVFVGVGTYRSMKDLPNEDAPGVYDALPFLIANTKQVMGLPALPDEPLNVVVLGGGDTAMDCVRTALRH-----------GAANVTCAYRRDEANMPGSKKEVKNAREENVQPVELVLDTHGRASGIRFLRTRLGEPDGQVPDSEFVMPADAVIMAFGFHPHGWLESHGVKDNWGRIAASVES--QTSNPKIFAGGDAVR---ADLVVTAMAEGRHAAQGILDWLA..................................................................................... 652
33 -14.500IDP05550 hypothetical protein lmo0481 [Listeria monocytogenes EGD-e] lmo0481 [Listeria monocytogenes EGD-e]  ali follow..  9  1.........MKNKKRTLVALTGAAIGTGERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRNFDGKNIHIIEGMHI-----------LGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMEEKLDNLTIRDWFMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQ---YESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDESTIPDDDVIMTNACMTDSATDRVGDFVKKPMKECTGEEILYEGSTNFAMISQFVEIPMVFTEEYSVRAARIAVYTLLDI....................................................................................... 540
34 -13.700IDP00551 gene: fadH; 2,4-dienoyl-CoA reductase YPO0589 [Yersinia pestis CO92]  ali follow..  11  370.....................................LPTDAPKRLAVVGAGPAGLAFAVTAARR--GHQVTLFDAAAE----------IGGQFNIAKQI-PGKEEFYETLRYFRRQLVLNGVTLQLNTLVQVKQLEFDEVILACGIQPRLPCINGIDHP----------KVLTYLDVLRDKKPVGQRVAIIGAGGIGFDTAEYLSQSGDSPR---VPPSPRQIFLLQRKASKVGEGLGKTTGWIHRTSLAMRGVKMLNSVSYEAIDDKGLHII-----RAEQACCLPVDTIIICAGQEPRRELHQP-----------------LDMGKTVYLIGGADK-AVELDARRAIDQGTRLALAI.......................................................................................... 673
35 -12.700IDP91651 lysine-N-oxygenase MBTG (L-lysine 6-monooxygenase) (lysine N6-hydroxylase) [Mycobacterium tuberculosis H37Rv] NP_216894 [Mycobacterium tuberculosis H37Rv]  ali follow..  10  2..........................................NPTLAVLGAGAKAVAVAAKASVLVDVPDVIAVERIGKDVGFPYRSALVPRRNTHRRWSQYLAWVADHGLKVIHGEVERLAVTGDALCTHETTVQADALMITGPGQA---------EKSLLPGNPRVLSIAQFWDRAAGHDRINAERVAVIGGGETAASMLNELFRHRVSTITVISPQVERRDALARTDRGVFSATVQEALLADDRIHHLRGRVA-----HAVGRQGQIRLTLSTNRGSENFETVHGFDLVIDGSGADPLELGLGGPLTADRLQEAIGYDLAVTDVTPKLFLPTLSGLTPGFPNLSCLGLLSDRVLGAGIFTPTKHNDTR............................................................................... 422
36 -11.400IDP92057 mitochondrial NADPH:adrenodoxin oxidoreductase, putative [Toxoplasma gondii ME49] TGME49_061030 [Toxoplasma gondii ME49]  ali follow..  10  13....RASVTRHQRRVFSQTQHGHTASPGCSPAATSHRGKCDFPRRVCIVGAGPAGFYCAKYLQKAVPDLQVDMVETLPS-----VRYGVAPDHPEVKHVTEDFDFVARQGFRFFGNVTLGTDISLDELR-------LYDAVILAYGAAGD--RIPGVSDLRGCLSAREFYNAHPRRNSQETRLPLSRASVLLRNGNVALDVARLLVKATTDIHHRALDWFSHARIRHVSVIGRRGWMQSSFSNKELRELVTDDKILAVVDPDDFSASLTEASLKELQDSRLKQRSRALFEQMVDNWDKRESLDRPVVHLRFLTSPIRALPHRDDASRLGSLEVVRNRLEGPAGAQMAVPEEKANLLEQKALRK....................................................................................... 377
37 -10.000IDP90343 gene: mhpA; FAD-dependent monooxygenase [Chlamydia trachomatis D/UW-3/CX] CT148 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  6  3............................................DVLIMGANPSGLILASILQQH--RARIKVIDSRDS-----------------------------------ITASLPLPLHSLPVVLSSSSLELLDNI--------------NLLGDLLDKGRKI-----------FGARYHWKQRTVL---FKFNQSSASRCPFSLLISYN-------------------------ELVTHLLEEFERLGGVVNWATRPVTQQNLFIESTKSSSQVYEGREIFTPKWIIACEMDADPDLKDLLKTQVTKSFVNFSSLLQYPFCHDRYIFLGSIANNLSFSYLSSNIHDAFNLGWKLLPVIKKAASSQLILSKEL........................................................................ 326
38 -10.000IDP00833 gene: betA; choline dehydrogenase SACOL2627 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  2.....................................SNKNKSYDYVIIGGGSAGSVLGNRLSED-KDKEVLVLEAGRSDYFWDLFIQMPAALMFPSG-TDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGME-DFAHCKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVE-----NGFRQEGFGPFDSQVHRGRRMSASRAYLHP----------------AMKRKNLTVETRAFVTEIHYEGRRATGVTYKKNGKLHTIDAEVILSGGAFNTPQLLQLSGIGDS----------------EFLKSKGIEPRVHLPGVGENFEDHLEV............................................................................................... 304
39 -9.940IDP04146 gene: dadA; D-amino acid dehydrogenase small subunit [Yersinia pestis CO92] YPO2147 [Yersinia pestis CO92]  ali follow..  8  2............................................RVVILGSGVVGVTSAWYLAKE--GHDVTVIDRQDGPAQETSA----AGQISPGYAA--LRNCDTSHYMVNKSRMVRLAEYSRDCLKDLRAATGIQYEGRQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPA-----------------------------LAKVAHKLTGGLRLPNDETGDCKLFTERLAKMAEQAGVKFIFNRSVDKLLVEGDQIA----GVLCGDDIIKADAYVVAFGAYSTALLAGLVVYPLKGY-SLTIPITDPASAPFSTVLDETYKIAITRFDDRIRVGGMAEIVGFNTQLAPARRET............................................................................... 330
40 -9.790IDP01966 gene: glf; UDP-galactopyranose mutase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1439c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  2...........................................YDYLIVGSGLFGSIFAYEATEK--GYTCLVVEQREH-----CYTENIKNINVHKYGAHIFRTSDQNIWDYMNQFCEFNHFINSPIAIYKDEIYNLEQAISLVGTDVYEKLIKGYTEKQWGRSCKDL----PASIIRRLPVRYIYDNNYFNDPYQGIPKGG----YTAIFDKMLKKSKVILNTDFLKYKDKVFTGCIDAYYDYRYGALEYRSLNFQGVAVVNYTDKEIPYTRIIEHKHFEFGNTDTTVISEEYPLEWIKGIEPYYPINDEKNQALYEKYKQLAKHESNVYFGGRLGEYRYYDMQD-VVRSALLFCKNELKNKQG.................................................................................... 368
41 -9.650IDP91445 D-amino acid dehydrogenase small subunit [Vibrio vulnificus CMCP6] VV1_0414 [Vibrio vulnificus CMCP6]  ali follow..  10  2............................................KAVVLGSGVVGLMSAWYLQKA--GYQVTVVDRQARSAEETSF----AGQISYGYSS--LANCQLSRYQVNKARMLAIANHSRECLSQLRQEHDIEYQGRQQGTLQVFRTQKQLIAIEKDIALLEQSGTRYQRMSVDECIKQEPG-----------------------------LAAVSHKLTGGLYLPDDETGDCYLFCQQMTELAQQQGVTFLFNTNVKKVNTQGNQVV----SVSTDAGELQADVYVVAMGSYSTALLAKLGVYPVKGY-SLTVPITDESQAPVSTVMDETYKVALTRFDDRIRVAGTAELAGFDPAIPEKRKAT............................................................................... 331
42 -9.010IDP06312 hypothetical protein SP_0741 [Streptococcus pneumoniae TIGR4] NP_345240 [Streptococcus pneumoniae TIGR4]  ali follow..  9  2.........................................KHFDTIVIGGGPAGMMATISSSFY--GQKTLLIEKNR----KLGKKLAGTGSDKSRTIIEALKKITELGGQVATQEIVSVKKVDDQFVLSADQTFTCEKLIVTTGGKS-TDLEAAESPLLTDFPHKALQGISLDDVTLSYGKHVITHDLLFTSGPAALRMSSFVKGGEVLSLDVLPQLSEKDLVTFLEENRE------KSLKNALKTLLPERLAEFGYPEKVKQLTEKEREQLVQSIK--------ELKIPVTGKMSLAKSFVTKGGVSLKE----INPKTLESKLVPGLHFAGEVMDINAHTGGTSALCTGWVAGSLHYD........................................................................................ 391
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;