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Query: sp|O43924|PDE6D_HUMAN Retinal rod rhodopsin-sensitive cGMP 3`,5`-cyclic phosphodiesterase subunit delta OS=Homo sapiens GN=PDE6D PE=1 SV=1, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYVLast
1 -99.100sp|O43924|PDE6D_HUMAN Retinal rod rhodopsin-sensitive cGMP 3`,5`-cyclic phosphodiesterase subunit delta OS=Homo sapiens GN=PDE6D PE=1 SV=1  ali  100  1MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV 150
2 -79.000sp|Q13432|U119A_HUMAN Protein unc-119 homolog A OS=Homo sapiens GN=UNC119 PE=1 SV=1  ali follow..  22  78......SPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSEGRFVRYQFTPAFLRLRQVGATVEFTVGDPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPTQSDSFYFVDDRLVMHNKADYSY. 236
3 -77.600sp|A6NIH7|U119B_HUMAN Protein unc-119 homolog B OS=Homo sapiens GN=UNC119B PE=1 SV=1  ali follow..  20  86......KPEDNIYSIDFTRFKIRDLETGTVLFEIAKPCVSDGRFVRYQFTPAFLRLRTVGATVEFTVGDPVSNFRMIERHYFREHLLKNFDFDFGFCIPSSRNTCEHIYEFPQLSEDVIRLMIENPTRSDSFYFVDNKLIMHNKADYAY. 247
4 -6.170sp|Q99819|GDIR3_HUMAN(removed signalp:1-28) Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2 SV=2  ali follow..  11  49LGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVLKEGV----DYRVKISFKVHREVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQ-----EYEFVTPVEEAPRGALVGPYLVVSLFTDDD............. 178
5 -6.060sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3  ali follow..  21  113.............................................................KISFRVNREVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAE-----EYEFLTPVEEAPKGMLAGSYSIKSRFTDDD............. 185
6 -6.000sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3  ali follow..  20  110.............................................................KIHFKVNRDVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPE-----EYEFLTPVEEAPKGMLAGTYHNKSFFTDDD............. 182
7 -5.920sp|Q8NDT4|ZN663_HUMAN Zinc finger protein 663 OS=Homo sapiens GN=ZNF663 PE=2 SV=1  ali follow..  21  1..............................................MYTGEKPDECKENEKALKKLYHTQNERTHAGEKVYDCKKCGKFFHEKACLTQHQRTHTTGKPSKCNDSERVLKESCLTPNQRIKT................... 85
8 -5.770sp|Q7Z3F1|GP155_HUMAN Integral membrane protein GPR155 OS=Homo sapiens GN=GPR155 PE=1 SV=2  ali   11  13......................................................................................LSNYAFLYG-VFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYVSAWLLTFPTMD.... 71
9 -5.510sp|Q6ZN55|ZN574_HUMAN Zinc finger protein 574 OS=Homo sapiens GN=ZNF574 PE=1 SV=2  ali   9  161.........................ECPRSFLLRRLLEVHQLVVHAGRQPHRCPSCAAFPSSLRLREHRCAAAAAQAPRRFECGTCGKKVGSAARLQAHEAAHAAAGPGEVLAKEPPAPRAPRATRAPVASPAALGSTATASPAAP.... 282
10 -5.430sp|P38936|CDN1A_HUMAN Cyclin-dependent kinase inhibitor 1 OS=Homo sapiens GN=CDKN1A PE=1 SV=3  ali follow..  19  15........................................................SKACRRL-FGPVDSEQLSRDCDALMCIQEARERWNFDFVTETPEGDFAWERV.......................................... 68
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.