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Query: sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKNLast
1 -99.800sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2  ali  100  1MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN 188
2 -12.200sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2  ali follow..  18  65....................................................RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGKVLGKGKLPKQP-VIVKAKFFSRRAEEKIKSVGGACVLVA................................................................ 148
3 -8.630sp|Q9P015|RM15_HUMAN 39S ribosomal protein L15, mitochondrial OS=Homo sapiens GN=MRPL15 PE=1 SV=1  ali follow..  18  90......................................................RRQYKPLSLNRLQYLIDLGRVDPSQPIDL-QLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTA................................................................. 177
4 -8.280sp|Q8NDG6|TDRD9_HUMAN Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=3  ali   44.............................................SIARWISKERAWTLGGVVGYQVGLEKIATEDTRLIYMTTGVL---KIVSAKSLMEFTHIIIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATISCKEFADYFAVPVQNKMNPA-YIFEVEGKPH.............. 170
5 -8.240sp|Q6IBW4|CNDH2_HUMAN Condensin-2 complex subunit H2 OS=Homo sapiens GN=NCAPH2 PE=1 SV=1  ali   10  26.....................ELFIATSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEMAVDTM--------SLRLLTHQRAHKRFQTYAAPSMAQP............................. 155
6 -7.220sp|Q8TCH9|YV004_HUMAN Putative uncharacterized protein FLJ23865 OS=Homo sapiens PE=2 SV=1  ali follow..  30  21.....................................................................................................VLPLLSPARGRIQFSGRKVTQMENLLLAQPLPDDCEILCGWRSLLHLTFLIGFAPHFPHSHLTEVLQSSGELAHQLAPSRCS..... 119
7 -7.060sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo sapiens GN=MBD5 PE=2 SV=3  ali   10  184.............................................................SVDAIYKAVVDAASKGMQVVITTAVNSTTQISPIPAL---------SAMSAFTASIGDPLNLSSAVSAVIHGRNM---LRNSRGARLPKNLDHGKNVNEGDGFEYFKSASCHTSKKQ.......... 296
8 -6.880sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2  ali   18  8.............................................SVAERVAKERAERVGLTVGYQIRLESVKSSATRLLVLLRRLEGDTALQGVSHIIV------DEVHERTEESDFLLLVLKDIVSQRPG--QVILMSATLNAELFSDYFNSC---------PVITIPGRTF.............. 125
9 -6.240sp|P59091|CU093_HUMAN Uncharacterized protein C21orf93 OS=Homo sapiens GN=C21orf93 PE=5 SV=1  ali follow..  24  2........................................................................................DSLTERCRPQPLAALGPADAQLHGPAAAGGGVVMLSSLCREHPHGKEVRQLRHLHRTRPPDTHQDMAPGLPHTHGLPARPSHVRH............... 101
10 -6.050sp|Q9Y2K3|MYH15_HUMAN(removed signalp:1-29) Myosin-15 OS=Homo sapiens GN=MYH15 PE=1 SV=5  ali   14  5.......................................................................LHNRENQSILFTGE-SGAGKTVNSKHI-FATIAAMIESRKKQGALEDQIMQANTILEAFGNAKTLRNDNSSRFGKFIRMHFGARGMLSSVDIDIYLLEKSRVIFQQAGERNYHIF.. 120

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.