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Query: sp|Q5VV42|CDKAL_HUMAN CDK5 regulatory subunit-associated protein 1-like 1 OS=Homo sapiens GN=CDKAL1 PE=1 SV=1, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTKDFRNGLGNQLSSGSHTSAASQCDSASSRMVLPMPRLHQDCALRMSVGLALLGLLFAFFVKVYNLast
1 -145.000sp|Q5VV42|CDKAL_HUMAN CDK5 regulatory subunit-associated protein 1-like 1 OS=Homo sapiens GN=CDKAL1 PE=1 SV=1  ali  100  1MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTKDFRNGLGNQLSSGSHTSAASQCDSASSRMVLPMPRLHQDCALRMSVGLALLGLLFAFFVKVYN 579
2 -67.000sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein 1 OS=Homo sapiens GN=CDK5RAP1 PE=1 SV=2  ali   24  1..................................................................................................................................................................................................................................................KVLGLQGLKEVTLLGQNVNSFRDNSGLRFAHLLDQV-SRVDPEMRIRFTSPHPKDFPDEVLQL--IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRDDVPEEVKLRRLEELITIFREEATKANSVGCTQLVLVEGLSKRSTDLCGRNDGNLKVIFPDAEAQPGDYVLVKITSASSQTLRGHVLCRTTLRD................................................................................ 296
3 -65.900sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein 1 OS=Homo sapiens GN=CDK5RAP1 PE=1 SV=2  ali   21  1..................................................................................................................AEQTIWNRLHQLKALKTRIGILGCMAERLKEEILKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDE----TYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSGLRFAHLLDQV-SRVDPEMRIRFTSPHPKDFPDEVLQL--IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGET................................................................................................................................................................................................................. 300
4 -53.500sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein 1 OS=Homo sapiens GN=CDK5RAP1 PE=1 SV=2  ali   19  53.............KDFSSRLAAGPTFQHFLKSA---SAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRIGILGCMAERLKEEILKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDE----TYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVFLPP...................................................................................................................................................................................................................................................................................................................................... 297
5 -34.100sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein 1 OS=Homo sapiens GN=CDK5RAP1 PE=1 SV=2  ali   24  1..................................................................................................................................................................................................................................................................................................................................................................................EEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRDDVPEEVKLRRLEELITIFREEATKANSVGCTQLVLVEGLSKRSTDLCGRNDGNLKVIFPDARAQPGDYVLVKITSASSQTLRGHVLCRTTLRD................................................................................ 146
6 -16.200sp|Q9HA92|RSAD1_HUMAN Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Homo sapiens GN=RSAD1 PE=2 SV=2  ali follow..  13  33....................................................................................................................................................................................................PEPAGRRAALYVHW---CEKRCSYC---IPRRLEEAAMQKCLVTEAQTLLRQRVESVFFGGGTPSLASPH---TVAAVLEAVAQAAHLPADLEVTLANPTSAPGSRLAEFGAAGVNR----LSIGLQSLDDTELRLLGRTHSACDALRTLAEARRL----RVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTARGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSN............................................................................................................................................... 276
7 -16.000sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2  ali follow..  13  105.....................................................................................................................................................................................................................TGNICVYCPGGPDSDFEYSTPFLQTRHRIEQLKQLGHSEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYE--ETRPDYCMKRHLSDMLTYGCTRL----EIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDS--GFKVVAHMMPDLPNVGLERDIEQFTEFPAFRPDGLKLYPTLVIRGTGSGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDI.............................................................................................................................................. 369
8 -13.900sp|O43766|LIAS_HUMAN Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3  ali follow..  13  3......................................................................................LRCGDAARTLGPRVFGRYFCSPVRPLSSLPDKKKELLQNGPDLQD--FVSGDLADRSTWDEYK-GNLKRQKGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEA---EYATATATIMLMGDCTRGCRFCSVK-TARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKERNPK---ILVECLTPDFRGDL--KAIEKVALSGLDVYAH--VETVPELQSKVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCLTLGQYMQPTRRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLV................................................................................................................................................. 349
9 -13.500sp|Q6NUM6|TYW1B_HUMAN tRNA wybutosine-synthesizing protein 1 homolog B OS=Homo sapiens GN=TYW1B PE=2 SV=2  ali   10  46...............................................................................................................................................................................................................TTPSLACANKCVFCWWHHTEWLWKMDQPEMILKEAIENHQNMIKQF---------------KGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKIVTQLYVSVDASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLMLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEFVRELVDLIPEYEIACEHEHSNCLLIAHRKFKIGG................................................................................................................................. 300
10 -12.800sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3  ali   13  74...............................................................................................................................................................................................................ISLTEKCNLRCQYCMPE-LTPKANLLTTEEILTLARLFVKEGIDKIRLTGGE-------IRPDVVDIVAQL-QRLEGLRTIGV-TTNGINLARLLPQLQKA------LSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELYNPVKVNCVVMRGL---NEDELLDFAALTEGLPLDVRFI-EYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKI........................................................................................................................................... 294
11 -12.100sp|Q8WXG1|RSAD2_HUMAN(removed signalp:1-15) Radical S-adenosyl methionine domain-containing protein 2 OS=Homo sapiens GN=RSAD2 PE=1 SV=1  ali follow..  13  51....................................................................................................................................................................................................PPLPTTPTSVNYHFTRQCNYKCGFCF--HTAKTSFVLPLEEAKRGLLLLKEAGMEKINFSG------GEPLQDRGEYLGKLVCKVELRLPSVSI-VSNGSLIRERWFQNYG-----EYLDILAISCDSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKISVINRFNVEEDMTEQIKALNPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVS....................................................................................................................................................... 272
12 -11.100sp|Q9NV66|TYW1_HUMAN tRNA wybutosine-synthesizing protein 1 homolog OS=Homo sapiens GN=TYW1 PE=1 SV=2  ali   11  1.......................................................................GGEDHQSLNSIV---VEDLGKIMDHVKKEK----------REKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGI---------------ESHRCMETTPSLACANKCVFCNPVGTEWRWKMDQPEMILKEAIENHQNMIKQF---------------KGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKIVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSLKVKQQRTVYRLTLVKAW---NVDELQAYAQLVSLGNPDFI.............................................................................................................................................................................................. 300
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.