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Query: sp|Q6UB28|AMP1D_HUMAN Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=MAP1D PE=1 SV=1, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAPSGVHLLVRRGSHRIFSSPLNHIYLHKQSSSQQRRNFFFRRQRDISHSIVLPAAVSSAHPVPKHIKKPDYVTTGIVPDWGDSIEVKNEDQIQGLHQACQLARHVLLLAGKSLKVDMTTEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDECGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQNGFQVCPHFVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRGAQILTKLPHEALast
1 -126.000sp|Q6UB28|AMP1D_HUMAN Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=MAP1D PE=1 SV=1  ali  100  1MAAPSGVHLLVRRGSHRIFSSPLNHIYLHKQSSSQQRRNFFFRRQRDISHSIVLPAAVSSAHPVPKHIKKPDYVTTGIVPDWGDSIEVKNEDQIQGLHQACQLARHVLLLAGKSLKVDMTTEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDECGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQNGFQVCPHFVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRGAQILTKLPHEA 335
2 -114.000sp|P53582|AMPM1_HUMAN Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2  ali follow..  40  20LQCPTCIKLGIFCSQECFKGSWATHKLLHKKAKDEKGDINTDPWAGYRYTGKLRPYPLMPTRPVPSYIQRPDYADHPLGMSETSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSA 378
3 -59.700sp|P50579|AMPM2_HUMAN Methionine aminopeptidase 2 OS=Homo sapiens GN=METAP2 PE=1 SV=1  ali follow..  15  44KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGDLYPNGVFPKGQECEYPPTQDGAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP--TGCSLNNCAAHYTPDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFN---PKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYQVKPIRNLNGHSIGQRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVH--DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINEN.... 409
4 -54.400sp|Q9UQ80|PA2G4_HUMAN Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3  ali follow..  18  4...............................................................................EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIEKEMKKGIAFPTSISVNNCVCHFSPQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQVIDGEKTIIQNPTDQQKEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDGEFVAQFKFTVLLMPNGPMRITSGPFEP 340
5 -37.200sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1  ali   12  2.................................................................DCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFDEKVRHSKLAESVEKAIEEKKYLAGADPSTVEM-CYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDP-SQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKILGFGMGIEFREGSLVIN--SKNQYKLKKGMVFSINLGF-------SDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKK 274
6 -33.400sp|Q9NQH7|XPP3_HUMAN Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1  ali follow..  19  241..................................................................................QRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGA-----DILAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVGRFTAPQAELYEAVLEIQRDCLALCFPGTSLENIYSMMLTLIGQKDLGIMKN-VGHYLGMDVHDTPDM-----PRSLPLQPGMVITIEPGI-------YIPEDDKDAPEKFRGLGVRIEDDVVVTQDSPLILSA..... 490
7 -32.800sp|P12955|PEPD_HUMAN Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3  ali follow..  19  186.......................................................................................FKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGG----MRHSSYTCICGSGENSAVLHGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPAGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEEHMGILSG-LGHFLGIDVHDVGGYPEGVERID-HLQPGMVLTVEPGIALADPARASFLNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRT. 471
8 -20.100sp|Q9NQW7|XPP1_HUMAN Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3  ali   20  20......................................................................................AVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKGGVTEIAADKAEEFRRQQADFVDLSFPTISSTGPNGAIIHYAPTNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGTPTAYEKECFTYV---LKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYTGHGVGSFLHEGPCGISYKTFSDEPLEAGMIVTDEP------------------YYEDGAFGIRIENVVLVVPVKTEPLTLVPIQT 269
9 -19.800sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1  ali   14  152.................................................................DCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVAESVEKAIEEKKYLAGADPSTVEM-CYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE................................................................................................................................... 300
10 -19.000sp|O43895|XPP2_HUMAN(removed signalp:1-23) Xaa-Pro aminopeptidase 2 OS=Homo sapiens GN=XPNPEP2 PE=1 SV=3  ali   16  32......................................................................................AVKNSKEQALLKASHVRDAVAVIRYLVWLEKNVPKGTVDEFGAEIVDKFRGEEQFSSGPSFETISASGLNAALAHYSPLNRKLSSDEMYLLDSGGQYWDGTTDITRTVHWGTPSAFQKEAYTRV---LIGNIDLSRLIFPAATSGRMVEAFARRALWDAGLNYTGHGIGNFLHEWPV-----QSNNIAMAKGMFTSIEP------------------YYKDGEFGIRLEDVALVVEATFEVVSFVPYDR 275
11 -14.300sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1  ali   13  3...............................................................................................................................................................................................................NFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKILGFGMGIEFREGSLVIN--SKNQYKLKKGMVFSINLGFSD-------LTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKK 124
12 -11.200sp|Q9NQW7|XPP1_HUMAN Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3  ali   23  2.........................................................................................................................................................................................................................IAVSAAVFPTGTKGHLLDSFARSALWDSGLDYTGHGVGSFLHEGPCGISYKTFSDEPLEAGMIVTDEP------------------YYEDGAFGIRIENVVLVVPVTFEPLTLVPIQT 119
13 -9.690sp|O43895|XPP2_HUMAN(removed signalp:1-23) Xaa-Pro aminopeptidase 2 OS=Homo sapiens GN=XPNPEP2 PE=1 SV=3  ali   18  4...............................................................................................................................................................................................................EAYTRVLIGNIDLSRLIFPAATSGRMVEAFARRALWDAGLNYTGHGIGNFLHEWPV-----QSNNIAMAKGMFTSIEP------------------YYKDGEFGIRLEDVALVVEATFEVVSFVPYDR 125
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.