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Query: sp|Q8NCR6|CI024_HUMAN Uncharacterized protein C9orf24 OS=Homo sapiens GN=C9orf24 PE=2 SV=2, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFLFSRKTRTPISTYSDSYRAPTSIKEVYKDPPLCAWEANKFLTPGLTHTMERHVDPEALQKMAKCAVQDYTYRGSISGHPYLPEKYWLSQEEADKCSPNYLGSDWYNTWRMEPYNSSCCNKYTTYLPRLPKEARMETAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGRLPFHGYESACSGRHYCLRGMDYYASGAPCTDRRLRPWCREQPTMCTSLRAPARNAVCCYNSPAVILPISEPLast
1 -146.000sp|Q8NCR6|CI024_HUMAN Uncharacterized protein C9orf24 OS=Homo sapiens GN=C9orf24 PE=2 SV=2  ali  100  1MFLFSRKTRTPISTYSDSYRAPTSIKEVYKDPPLCAWEANKFLTPGLTHTMERHVDPEALQKMAKCAVQDYTYRGSISGHPYLPEKYWLSQEEADKCSPNYLGSDWYNTWRMEPYNSSCCNKYTTYLPRLPKEARMETAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGRLPFHGYESACSGRHYCLRGMDYYASGAPCTDRRLRPWCREQPTMCTSLRAPARNAVCCYNSPAVILPISEP 262
2 -7.310sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=2  ali   11  136.......................CIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTG--------------------------IFAAE-KLIAMDPYEYFQVGWNIFDSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCK.......................................................... 298
3 -6.640sp|O43909|EXTL3_HUMAN Exostosin-like 3 OS=Homo sapiens GN=EXTL3 PE=1 SV=1  ali   11  56....GNVPREQFTVVMLTYEREEVLMNSLENKVVVVWNSPK-------LPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMF--FRVWREARYNSNYSCELSMVLTAFFHKYYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRW--TFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQFR.................................... 298
4 -6.360sp|Q92729|PTPRU_HUMAN(removed signalp:1-18) Receptor-type tyrosine-protein phosphatase U OS=Homo sapiens GN=PTPRU PE=1 SV=2  ali   9  17............AALTDSYTRSAALQSTTPDFWRLVYDYGCTSIVMLNQLNQSNSAWPCLQYWPEPGRQQYEFMSGTADEDLVARVFRVQNISRLQEGHLLVRHFQFLRW---SAYRDTPDSKKAFLHLLAEVDKWQAESGDGR----------------TIVHCLNGGGRSGTFCACATVLEMIRCHNLVDVFFAAKTLRNYKPNMVETMDQYHFCYDVALEYLEGLESR............................... 228
5 -6.280sp|Q8N3J2|METL4_HUMAN Methyltransferase-like protein 4 OS=Homo sapiens GN=METTL4 PE=2 SV=3  ali follow..  12  261....SSFLLSDISCMQPLLNYRKTFDVIVIDPP---WQNK-------SVKRSNRYSYLSPLQIQQIPIPKLAAPNCL---------TWVTNRQKHL---RFIKEELYPSWSVEVVAEWHWVKITN---KKPYEGLIRVQEKTALPLRNADVNVLPIPDHKLIVSVPCTLHSHKPKDYIKPDGEYLE-LFARNLQPGWTS---GNE--FQHVDYFIAVE............................................ 469
6 -6.280sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1G OS=Homo sapiens GN=CACNA1G PE=2 SV=3  ali   9  135.......................TFRKIVDSKYFGRGIMIAILVNTLSMGIEYHEQPEELTNALEISNIVFTS--------------------------LFALE-KLLVYGPFGYIKNPYNIFDSVWEIVGQQGGGLSVLRTFRLMRVLKLVRFLPALQRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFASERD........................................................... 296
7 -6.070sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A PE=1 SV=4  ali   10  103......HKVLIWNCCAPWLKFKNIIHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLTVGNLVFTG--------------------------IFTAE-KLIAMDPYEYFQQGWNIFLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECV............................................................ 280
8 -5.960sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=2  ali   9  183................................................................................................FTYIFILE-KWIAYGYKTYFTNAWCWLDFLIVDVSSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYEC............................................................. 300
9 -5.950sp|Q96PH1|NOX5_HUMAN NADPH oxidase 5 OS=Homo sapiens GN=NOX5 PE=1 SV=1  ali   10  5......................................................................YRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDF------IWINRDQRSFEW--FVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEK--KGKVQVFFCGSPALAKVLKGHCEK............................... 155
10 -5.860sp|Q8NBJ7|SUMF2_HUMAN(removed signalp:1-25) Sulfatase-modifying factor 2 OS=Homo sapiens GN=SUMF2 PE=1 SV=2  ali follow..  15  29......VREATVKPFIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRG----------------RLPTEEEWEFAARGYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSP--AQNNYGLYDLLGNV--ASPYQAAEQDMRVLRGASWIDTADGSANHRARVTTRMGNTP........................... 254
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.