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Query: sp|Q8WW62|TMED6_HUMAN(removed signalp:1-21) Transmembrane emp24 domain-containing protein 6 OS=Homo sapiens GN=TMED6 PE=2 SV=2, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QKTEPLSGSGDQPLFRGADRYDFAIMIPPGGTECFWQFAHQTGYFYFSYEVQRTVGMSHDRHVAATAHNPQGFLIDTSQGVRGQINFSTQETGFYQLCLSNQHNHFGSVQVYLNFGVFYEGPETDHKQKERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNYVNWWSTAQSLVIILSGILQLYFLKRLFNVPTTTDTKKPRCLast
1 -105.000sp|Q8WW62|TMED6_HUMAN(removed signalp:1-21) Transmembrane emp24 domain-containing protein 6 OS=Homo sapiens GN=TMED6 PE=2 SV=2  ali  100  1QKTEPLSGSGDQPLFRGADRYDFAIMIPPGGTECFWQFAHQTGYFYFSYEVQRTVGMSHDRHVAATAHNPQGFLIDTSQGVRGQINFSTQETGFYQLCLSNQHNHFGSVQVYLNFGVFYEGPETDHKQKERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNYVNWWSTAQSLVIILSGILQLYFLKRLFNVPTTTDTKKPRC 219
2 -86.200sp|Q13445|TMED1_HUMAN(removed signalp:1-23) Transmembrane emp24 domain-containing protein 1 OS=Homo sapiens GN=TMED1 PE=1 SV=1  ali follow..  21  1............AGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVIGGA----GLDVDFTLESPQGVLLVSESKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT..... 204
3 -85.400sp|Q9Y3A6|TMED5_HUMAN(removed signalp:1-27) Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1  ali follow..  19  1..............FTPSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGA----GLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSRT..... 202
4 -84.800sp|Q9BVK6|TMED9_HUMAN(removed signalp:1-37) Transmembrane emp24 domain-containing protein 9 OS=Homo sapiens GN=TMED9 PE=1 SV=2  ali follow..  17  1......................LYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDPATPGLGMFVEVKDPEDKVILARQGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV....... 198
5 -84.300sp|Q7Z7H5|TMED4_HUMAN(removed signalp:1-29) Transmembrane emp24 domain-containing protein 4 OS=Homo sapiens GN=TMED4 PE=1 SV=1  ali follow..  17  1......................LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDPSTPGLGMHVEVKDPDGKVVLSRQGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV....... 198
6 -83.400sp|Q9Y3Q3|TMED3_HUMAN(removed signalp:1-21) Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens GN=TMED3 PE=2 SV=1  ali follow..  18  3.................PCGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGG----HYDVDCYVEDPQGNTIYRTKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDE----PPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPISR..... 192
7 -83.000sp|P49755|TMEDA_HUMAN(removed signalp:1-31) Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2  ali follow..  13  1......................ISFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSHLKITDSAGHILYSKEATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVI----LDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE...... 188
8 -82.700sp|Q9Y3B3|TMED7_HUMAN(removed signalp:1-34) Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2  ali follow..  19  1....................SEITFELPDNAKQCFYEDIAQGTKCTLEFQVITGG----HYDVDCRLEDPDGKVLYKMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQV-----GEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTR.... 187
9 -81.900sp|Q15363|TMED2_HUMAN(removed signalp:1-20) Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1  ali follow..  16  1......................YFVSIDAHAEECFFERVTSGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIG------EAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV....... 181
10 -14.400sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3  ali   64.......................SASVLRGAPEVAVEILEGESVITWDFDILRG-------DVVFSLYSRVEAPLVCREGESIQGSHVTRWPGVYLLQWQMHSPPSSVACSLPGVDDVLTALHSPGPKCKLLYYCEVLASFRGSMSSLES-CTSGFSQLSAATSSSSSGQSHSSSLVSR........................................ 246
11 -10.500sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2  ali   173.....................................................................................SHVTRWPGFYILQWKFHSMPACAASSLPRVDDVLASLQVSSHKCKVMYYTEVIGS-----EDFRGSMTSLESSHSGFSQLSAATTSSSQSHSS......................................... 260
12 -10.400sp|Q6PL24|TMED8_HUMAN Protein TMED8 OS=Homo sapiens GN=TMED8 PE=1 SV=1  ali follow..  12  183............LVVKRGEVVTIRVPTHPEGKRVCWEFATDDYDI--GFGVYFDWTPVTSTDITVQVSDPVYRRDSHRDVQAGS--HDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYTS.................................................................................................... 325
13 -9.850sp|Q9BQS8|FYCO1_HUMAN FYVE and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=FYCO1 PE=1 SV=2  ali   16  167............LFVRSSTYSLIPITVAEAGLTISWVFSSDPKSI--SFSVVFQEAEDTPLDQCKVLI-PTTRCNSHKENIQGQ--LKVRTPGIYMLIFDNTFSRFVSKKVFYHLTVDRPVIYDGSD............................................................................................ 276

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.