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Query: sp|Q96Q11|TRNT1_HUMAN tRNA-nucleotidyltransferase 1, mitochondrial OS=Homo sapiens GN=TRNT1 PE=1 SV=2, from H.sapiens

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKTLast
1 -112.000sp|Q96Q11|TRNT1_HUMAN tRNA-nucleotidyltransferase 1, mitochondrial OS=Homo sapiens GN=TRNT1 PE=1 SV=2  ali  100  1MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT 434
2 -8.300sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2  ali   19  4............................................................FVGNV---------------GADTTPEELAALFA------------PYGTVM--------SCAVMKQFAF-------VHMRE--NAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKI-FVGNVSAACTSQELRVVKDYAFV------HMEKEADAKAAIAQLNG--KEVKGKRINVELST.............................................................................................................................................................................................. 148
3 -8.220sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1  ali follow..  17  5............................................................FIGN---------------LPREATEQEIRSLFE------------QYGKVL--------ECDIIKNYGF-------VHIED--KTAAEDAIRNLHHYKL--HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRIVKDYAFV------HMERAEDAVEAIRGLDN--TEFQGKRMHVQLST.............................................................................................................................................................................................. 147
4 -7.790sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1  ali follow..  17  5............................................................FIGN---------------LPREATEQEIRSLFE------------QYGKVL--------ECDIIKNYGF-------VHIED--KTAAEDAIRNLHHYKL--HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRIVKDYAFVH------MERAEDAVEAIRGLDN--TEFQGKRMHVQLST.............................................................................................................................................................................................. 147
5 -7.080sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1  ali follow..  19  11....................................................VDRSLRSVFVGN---------------IPYEATEEQLKDIFS------------EVGPVV------SFRLVY---DRET-GKPKGYGFCE---QDQETALSAMRNL------------NGR-EFSGRALR-VDNAASEKNKEELK-------GAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMCVQNSPQEARNMLLQNPQLAYALLQA................................................................................................................................................................... 175
6 -6.970sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1  ali follow..  19  1.................................................................................................................MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELY----------LLFRPFKGYEGS-------------LIKLTSKQPVGFVSFDSR---------SEAEAA-------KNALNGIRFDPEIPQTLRLEFAKA..................................................................................................................................................................................... 101
7 -6.870sp|Q86Y91|KI18B_HUMAN Kinesin-like protein KIF18B OS=Homo sapiens GN=KIF18B PE=1 SV=2  ali   16  4......................................................................................................................................................RDSKLTRL-------LKDSLGG--NCRTVMIAAISPSSLTY-EDTYNTLKYADRAKEIRLSLKSNVTSLDCHISQYATICQQLQAEALRKKLQV.............................................................................................................................................................................................. 89
8 -6.620sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1  ali follow..  12  16....................................................SQHDPGKMFIGG---------------LSWQTSPDSLRDYFS------------KFGEIR----------CMVMRDPTTKRSRG-VTFADPASVDLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI-FVGGLSANTVVEDVK-----QYFEQFGK-TFENEDVVEKVCEIHFHEINNKMVE...................................................................................................................................................................................................... 181
9 -6.430sp|O43252|PAPS1_HUMAN Bifunctional 3`-phosphoadenosine 5`-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2  ali   9  69............................................SMALEEYLVCHGIPCYTLDG---DNIRQGLNKNLGFSPEDREENVRRIAEVAKL-------ADAGLVCITSFISPYT-NNARQIHEGASLPFFEVFVDAPLHVCEQRD--VKGLYKKARAGEIKGFTGIDSEYEKPEAVLKTDSCDVNDCVQQVVELLQERDIVPVDASYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCL....................................................................................................................................................................... 291
10 -6.420sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens GN=RBPMS2 PE=2 SV=1  ali follow..  20  1............................................................................................MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTL--------------FVSGLPVDIKPRELY----------LLFRPFKGYEGS-------------LIKLTARQPVGFVIFDSR---------AGAEAA-------KNALNGIRFDPENPQTLRLEFAKA..................................................................................................................................................................................... 108
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.