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Query: sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5, from H.sapiens

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EEAGARVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQADQELLast
1 -4.840PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  10  9................................................................................................................................................................GLVASLVCLLPQVAEAQIAASNPLEWTALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFL--------------------------TLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVMLTGAERSKTLWALNDQLSDFSRKLHLLYL........... 189
2 -4.530PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  13  23........................................................................................................................................................TLKRMPQPVTALLAAMITP-----AVLISGAGTLIMSTST----------------RVGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRA--------------QAFYTSVALLVLTSILLGLDGLFDVNTGSLPLLVALGGSVSLAYGALLLSYEARYSAATTKEEMRFLEELGQHYAELYADEL............. 194
3 -4.230PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  22  17.................................................................................................................................................DIAKRTSISGLLISCVMLLIGILSFASTSTVSMALMVFGTGLFLLG--TGSIAKERSIFFDLKHMDKLTDLVNS........................................................................................................................................................ 110
4 -3.020PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  16  1........................................................................................................................................................SIVYAIGGLLMAVGTGLYAFFIIQDVAVMLIGAICFATMQMRQQYLGTNLTIRRLRKIMVLADIG.......................................................................................................................................................... 67
5 -2.970PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  9  4...............................................................................................................................LLPLEAMEYEINKAGNPLEFKGLKSQAGGLVAVLLVVVILYIAGVNQWICIPFGLL-SGSLLVWLTFRLNARYGEHGLMKLLSGK............................................................................................................................................................... 93
6 -2.610PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  9  36.................................................................................................................................................................................PLVAAVCAVILVVAGIIGWNA---SGAKLAEAKEACVTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYE-----------GCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAV-------------------VESKAAKRLDDAKTNLTAKLDEASKLLAD....... 190
7 -2.550HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  13  32.......................................................................................................................................................AGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATA-LSSIVAPGDPCEAASRVARANGAEVTT................................................................................................................................................. 105
8 -2.240PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  8  1............................................................................................................................................MHR-----SISGSDCG--------------PTPTSSTLPLTLSAGVLALVLLSCDGVGDFGDTNEDPTTANDPDLEFTTLQLGVSGSRFDMWRTNLIYTMPIVQHIANPGFYAGNFNQYVGAWSASFFDTRYGGGPNGSNFLRTVTNAETLISELEGKPRQVNRLAATRIMRVLTFQRLTDVYGDVPYFDAGKGALEGEFTPHYTRQDSIYMDLHDELRAAVDQFDASQP. 233
9 -2.150PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  9  1................................................................................................................MKRKVKSIRKTMWGVYWKLHDKRKRLVERLKG-----------------------YLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHA........................................................................................................................................................... 81
10 -1.930PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  10  146.......................................................RMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSA--------ETVEVDLRTLEVVQCHGKHN---------QDTEYHERIIDLVNKNANLIRERMKA............................................................................................................................................. 322
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.