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Query: sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3, from H.sapiens

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPEDRSDPDACTISKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQLast
1 -5.270PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  13  2..........................................................SYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTA-GMMVIMMPFFFLAMYEKNGQPLEVI--LEHMIQAIFQRPKIRP............................................................................................................................................................................................................................................................................. 95
2 -4.820HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  17  39....................................GVIAVLLAAALGVSGLIQAQAA-----AGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSV----DVVVEVSVEARV-AVSSARAGPVDDP......................................................................................................................................................................................................................................................................................... 142
3 -4.720HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  14  60...................................................LADVFVLVIGFILKFFIILAGIFLLPLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLFKIRPLPTQARWILLALWLISFILCGVYI.......................................................................................................................................................................................................................................................... 183
4 -4.290PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  11  103..............................................................RPSQLTQPVQIKLAPFDGAKLLIAADCTAYAY--SFHEKFIKGHVTCDYSEKLTEIIRRNDIQSVTIVRME---GLEMAAKKALQDSGKFIPWQVATISIDGRIL............................................................................................................................................................................................................................................................... 223
5 -4.000PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  2........................................IVYAIGGLLMAVGTGLYAFFILTIRRLRKIMVLADIGFILAGLFMNSIGGYTTYVNIFYHNWV-------------VILLIATALEV-------YTLHRIDYLIEK.................................................................................................................................................................................................................................................................................... 129
6 -3.740PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  14  32....................................AILMPMILVVSFGNCFGKFAI------VKKVYEVNDGFNIGSGLLAKFILVMYFPFSILYFV-----------------------GFFFDLILFNLIEFWSGNNPVGYNEYDENGKYVKAY......................................................................................................................................................................................................................................................................... 125
7 -3.720HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  16  20......................................AGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNI-SSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFV-GCIAVALAEILHTF-PIIYKRMKLRAGLGIIVISMAIGKALGAL............................................................................................................................................................................................................................................................. 147
8 -3.500HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  18  17....................................LAITCLMATTAFAAGTGDVAGAVE--ASTQIKSVVDNVV--FPAIDLILAVFFF------------KLGTAYFEYRKSGQFEWAAPAILFACLV-----FTLTAPM----------------YLWSI................................................................................................................................................................................................................................................................... 112
9 -3.490HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  1........................................................VVVSILFQKARKVLNN----EANYFSTVVFIFIAVLLLAFII-------DLFSIISTKQELDHAADQMVKQIQLS-----GVNGETDELFEFLSSQIEGAENISYSIDATYTSPRPSGMTNAIQLGTPFFITIEGDAKLGGFWNFDLVNITVVARGSGVSEHY........................................................................................................................................................................................................... 151
10 -3.450PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  1.....................................................................................................................................................................................................MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDFKLNDADKDEEKSLRAALTLHTIRET---------LFEIFSSQVENKNVIDSLMGK------YLDGNGNPLSVRKTKSVVPVSD........... 218

FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 9 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.