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Query: sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2, from H.sapiens

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPALQASLDKFLSHVISALVSEYRLast
1 -5.710PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  12  258...FQPSDSLMTETLARVEQKNFSKAKQAYRILSLKYPEKSGFFAD-----------------IRAIEKLQEN..................................................................... 313
2 -4.960PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  26...AEFRPAELAGIWQLCHEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLK---YFIAKDLNGNELNTWFHETWKRV............. 151
3 -4.920HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  18LGLSAQAARNLYA---------GKANAQVVNYLLE-SPRFLDLTYILEQYFNDTVAAAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKE-VKKEIGNDFAAMQSMTAEAAKRMFTEVAK 150
4 -4.140HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  14  1...............................................................MSKKKRGEERMKEEDNILKKVGK--KNSFKVPEGYFENLTSEVMGKLPE.............................. 47
5 -4.100PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]  ali follow..  128.TYPDIGVRIAHKNFTVLDKYLKSVGTKLL---YVQAPYKVNRDNNQLPYGLKDYPNKNADKLLEGLNKLKIDYIDFREVFANNFLDYPSLFFNTDHHWTTEAAFFYQYMLDYMEKNYE....................... 243
6 -3.920PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  15  6...........................NFLDAMFAPYPASTRLTDAKVELRAMADAIASGMTHNEAVGRVITDFGNLQEIAPVLG......................................................... 68
7 -3.760PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  40..MMQMQTNQMVRALMLDDATAAK-----FTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDIAKMLKDQFAQSRKMLDIREKYYNEFSKILIYQQEKSNMNKFRKEFDR.................. 165
8 -3.570HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  15  35MENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDS-----SMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLP............................................. 126
9 -3.440PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  107AEFAIHPADSVDSVWVKLAHTQEEQGWIRETELKESFVPTDSISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQLQLVYFNDIDS---------YPLF--CLLMAFSATVYESMQVFVPDTWEHFY............ 227
10 -3.390PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  16  5.............................FGYLFLDRPPYQVL--------ASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAI-------YEALAAWWEARGLLRRGHSQRDLFNHLASFAIHLAR 102

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.