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current user: public |
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Query: sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2, from H.sapiens |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 | |||||||
# | Score | Template | Links and tools | %id | First | MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPALQASLDKFLSHVISALVSEYR | Last |
1 | -5.710 | PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217] | ali follow.. | 12 | 258 | ...FQPSDSLMTETLARVEQKNFSKAKQAYRILSLKYPEKSGFFAD-----------------IRAIEKLQEN..................................................................... | 313 |
2 | -4.960 | PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013; | ali follow.. | 7 | 26 | ...AEFRPAELAGIWQLCHEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLK---YFIAKDLNGNELNTWFHETWKRV............. | 151 |
3 | -4.920 | HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; | ali follow.. | 9 | 18 | LGLSAQAARNLYA---------GKANAQVVNYLLE-SPRFLDLTYILEQYFNDTVAAAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKE-VKKEIGNDFAAMQSMTAEAAKRMFTEVAK | 150 |
4 | -4.140 | HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234; | ali follow.. | 14 | 1 | ...............................................................MSKKKRGEERMKEEDNILKKVGK--KNSFKVPEGYFENLTSEVMGKLPE.............................. | 47 |
5 | -4.100 | PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg] | ali follow.. | 6 | 128 | .TYPDIGVRIAHKNFTVLDKYLKSVGTKLL---YVQAPYKVNRDNNQLPYGLKDYPNKNADKLLEGLNKLKIDYIDFREVFANNFLDYPSLFFNTDHHWTTEAAFFYQYMLDYMEKNYE....................... | 243 |
6 | -3.920 | PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982] | ali follow.. | 15 | 6 | ...........................NFLDAMFAPYPASTRLTDAKVELRAMADAIASGMTHNEAVGRVITDFGNLQEIAPVLG......................................................... | 68 |
7 | -3.760 | PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740; | ali follow.. | 7 | 40 | ..MMQMQTNQMVRALMLDDATAAK-----FTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDIAKMLKDQFAQSRKMLDIREKYYNEFSKILIYQQEKSNMNKFRKEFDR.................. | 165 |
8 | -3.570 | HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399; | ali follow.. | 15 | 35 | MENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDS-----SMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLP............................................. | 126 |
9 | -3.440 | PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572; | ali follow.. | 9 | 107 | AEFAIHPADSVDSVWVKLAHTQEEQGWIRETELKESFVPTDSISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQLQLVYFNDIDS---------YPLF--CLLMAFSATVYESMQVFVPDTWEHFY............ | 227 |
10 | -3.390 | PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073] | ali follow.. | 16 | 5 | .............................FGYLFLDRPPYQVL--------ASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAI-------YEALAAWWEARGLLRRGHSQRDLFNHLASFAIHLAR | 102 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5. |