current user: public
If you have questions about the server, please let us know.

Query: sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1, from H.sapiens

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .
# Score Template Links and tools%idFirst GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRIALRYYNQSEAGSHTWQTMYGCDLGPDGRLLRGHNQLAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGKGGSYSQAASSDSAQGSDVSLTALast
1 -4.920HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  10  83...............................................................................................................................................................................SMIHHDEVYAISRDATPAPKKVSNVKDC------ASDVTLQLSAASQSVPGSLDFTATIVHEGSG-DSGRVLTITSGQETIYKCPADSRLLKDVQKVTWNTNANATLAKCTD---------------------ESGWAKVNAGTYLSLKDHPKVKSDPVTFTV 239
2 -4.210PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)  ali follow..  10  58.SHRLSYEYYALSQRRELWTHDVGLFEYDRRGLRYHHLSVSWKHHPPVVTAETTVLNQYLDGHELADPVPPEMDRQFLEAIKEVSARRMISTYYLM-----------------------GEGF------------------------SGAESGKSWMNLSLKQLCAMKRHVFAGQN---LYARGACYHSFDQGSFGRKPGFIAANAGLLTKDIYLRSVHKHAPQK------ILAAAGTPWYSAVSRKAIIIDGQEQLIIRMRDPLTNFEQTVVMTLDALPQRPPKTTKLLIET............................................. 294
3 -3.550PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  6  11..........................................................................................................................................................................................................PSFISYGNLQTATMIIGTPLSIAESYVHKNMGEILQ-QTMSITQIRIKPTDKNKLFLNINHINVSDWFKEQLNKLNQSVRMKQ-----------------------RQKIVRVQSSNDSILLDFSKKVKFNAALN. 121
4 -3.400PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  12  16..........................................................................................................................................................................................LTSCSMFEIDNYEEPSETIWG------EVVDEATGKRVLTDQGSEGFYCMMDGTFQN---TKIFKGE---YNVRIDGPFIPGSVNTEISGTTK........................................................... 128
5 -3.070PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  12  292........................................................................................................................LDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDEGKALSHCVGGSNYIKQHIIIFVRDKQDLEKSLYTLEY--KNGQIYQLRGKHNCDPTKDVQ------------MAANKWAKLLKSKTKVL..................................................... 450
6 -2.790PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  7  3............................................................................................................................................ETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQ-GC----AFADNTPVLFAHGITHLYDELPHHAVQS-GKTTYYRIYRKEITIQEQDYIRDSFVRAGFSSD-MYELQSAMVKS......................................................... 157
7 -2.770HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  13  1.........................................................................................................................................................................................................................MSKKKRGEERMKEEDNILK---KVGKKNSFKVPEG----Y-----FENLTSEVMGKLPEKEGPAFEEVKQPM--LYMAAMFIGAALIIRVASSNHQPTTAGDHLTANEAATEVVSDEYIDV 115
8 -2.730PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  11  14..........................................................................................................................................................................................LTMCSAFSLKKGHSKTVYAFGIAAS--TVVYFTDIQILDS-VSKEGFLTHRD-SYQLKNYVEDNGLQQNS-TCMIYFSENRKKLEKEATKILSKYKRN...................................................... 113
9 -2.710PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  11  59............................................................................................................................................................................................FIMEQEKDTGQLFMITDQGYFISRIPEEKRLK-EFVRNTEIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQAKDMCEKWRSDAQE.......................................................... 164
10 -2.670PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali follow..  18  1..................................................................................................................................................................................................................................................MEIQFVIVRSENAEYLCHNVYVDVSDPSTEFVSGEDD........................................................... 40
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.