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Query: sp|Q5VV42|CDKAL_HUMAN CDK5 regulatory subunit-associated protein 1-like 1 OS=Homo sapiens GN=CDKAL1 PE=1 SV=1, from H.sapiens

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTKDFRNGLGNQLSSGSHTSAASQCDSASSRMVLPMPRLHQDCALRMSVGLALLGLLFAFFVKVYNLast
1 -2.620PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  1MPK----------HPTGTKGTAGTARKFPTHTGACNKVGNDNISDDKEGEEELLPGSEPQHQLPTFPENDW--------PEFLQRIIKA-----GSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQCFVVAPSASGKGILSYIRLLV-----EPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGS--HGHWSDTLRKAFDHDRLSYNRRTD-PSQVQTFIPTAEDGSYSRQLYYYMCGFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFEREMYSFVARLAVNLCRIMSEVAVLRALESPSQEDFHAVLSLAEPLYCHATHILSFLPNTEISHRPFQKLGDEFTRT---QLLEEAVAMGIKENTALTWLKRLTKH....................................................................................................................................... 497
2 -2.580HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  13  3...............................................................................................................................................................................................VDTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAE-----LNNAPILPEHINCQG........................................................................................................................................................................................................................................................................................................................... 70
3 -2.560PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  13  42.............................................................................................................................................................................................................................................ILNKIKFTSDLERRRYLILRRKTRKYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELK-----------KLTRTEGQ--LVKLIHRQTGVTTF-QLIKNLRSGWRAFLFDIELKSEYPVNNREDF-----LIEDILQRSFQRNILDNQPSVLNIDYFEASSK........................................................................................................................................................................ 208
4 -2.540PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  13....................................................................................................................................................................................................................GCYLLLFACPIIFAS--IMKKEFIGRTAKSLSLALAIFSGCIFG---QEIVAGELERCFLAMPESVLPIVTMEERNDLHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFS-DSSSVICVVTTVLHPVADSRIDEDFFLPHTDRQSYAYQAIYASLTPS----YMQVSLSEESDTLSIRQ-TVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQV......................................................................................................................................... 263
5 -2.250PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371  ali follow..  10  2...........................................................................................................................................................................................................LISFSFLLYSCDE---------------KPKSGITNPSFLPNASGENNEMLIVMDS-TKFKGKIGRELVDIYSSYISGLPQPEPRDLRYIKPRKFNSILKHAKNI---------VVAFSLEGNSLDSEILRRNFNSESLDKIQSDSSLFYRNQYARGQVVLYLFSENDDDLYSKIKRNRNSILKFFD-----------DELKKRVDTEIFRKVENNLMDKIFTDHNIKIKIPYGYDLAKSINEENSNFF............................................................................................................................... 218
6 -2.030PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  10  58.............................................................................................................................................................................................................................................LMLECSEVLA-GVKPANLISIVNRTRPRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGN----------NSFPH---EIGLFIGYPAKDVAAF-----------------MGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHP................................................................................................................................... 244
7 -1.940PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  10  1...................................................................................................................................................................................................................................................................MSIFANLFKKQADADAKVVGNVEDFVSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLFKVATQGGKSASRKMLMQDYGISEFKEIDTSIKKNCRTQNDVQAYLFMYQGFSS-DLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCTKTVWKA--DDVHKTAAAVRQYKERLGFSEQWMSE........................................................................................................................................ 189
8 -1.930PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  179...............................................................................................................................................................................................................................................VEIEFLQKIKARQLA---VDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPE--GVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENII------MPKNLVIAHDNAVKLLYQMKHEVEE--QQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTE--------GKALSHCVGGSNYIKQHIEGKT---TIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVL.............................................................. 450
9 -1.850HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  12  11......................................................................................................................................................................................................................................KNYAIDEL-AQAARNLYAGKANAQVVNYLLE------SPRFLDLTYILEQYFNDTVAAGYAAQNQTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIE-----NQFMLAVKEVKKEIGNDFAAMQSMT---AEAAKRMFTEVAKGQDMTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRAAQYRREQLCALAQKGTQSS.................................................................................................................................. 227
10 -1.830PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  24  125..................................................................................................DGAKLLIAADCTAYAYAS--------HEKFIKGHVTLIGC-PKLDSVDYSEKLTEIIRRNDIQSV------------------------------------------TIVRMEVPC---CG-----------------GLEMAAKKALQDSGKFIPWQVATISIDGR.......................................................................................................................................................................................................................................................................................................................... 221

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.