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Query: sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3, from H.sapiens

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPEDRSDPDACTISKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQLast
1 -7.660sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A PE=2 SV=1  ali   27  90.......................................................................................................................................................................................................................................................................................................................................................................................................SRVGNPILYSMQNSYFTS............. 109
2 -7.350sp|O60663|LMX1B_HUMAN LIM homeobox transcription factor 1-beta OS=Homo sapiens GN=LMX1B PE=1 SV=2  ali   22  102.......................................................................................................................................................................................................................................................................................................................................................................................................ARVGNPILYSMQSSYFAS............. 121
3 -6.700tr|Q6ZV11|Q6ZV11_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC23A3 PE=2 SV=1  ali   13  12....................................................GNSSLMLHLCRNTSLQEGYPAHGGLFSAPGLLPVPLEASFNVINSHSSPCLPAPFGADPS---------LCVDCFCLCGIQCYPPGTVCPHQGTMDLAA-SPRLDLSKWLT................................................................................................................................................................................................................................................................... 126
4 -6.470sp|Q9Y426|CU025_HUMAN C2 domain-containing protein 2 OS=Homo sapiens GN=C2CD2 PE=1 SV=2  ali   10  18..........................................................................................................VVCHV--VGQAIQFLVSETPALGAGCRLYDMRLSPFHLQLEFHMKEKREDLQISWSFI.................................................................................................................................................................................................................................................................. 73
5 -6.170sp|Q86UP8|GTD2A_HUMAN General transcription factor II-I repeat domain-containing protein 2A OS=Homo sapiens GN=GTF2IRD2 PE=2 SV=2  ali   20  2................................................................................................VFQEKWE-NIPTC--------LICKQSMSVSKEYNLRRHYQTNHSKHYDQYMERMRDEKL.......................................................................................................................................................................................................................................................................... 61
6 -6.130sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2  ali   14  9...............................................FLQPPPHQSIIIERMHSGARRFVTLDFGRPILLTDVLIPTCGDLASLSIDI---WTLGEEV-RLVVATDISTHSLILHDLIPPPVCRFMKITVIGRYGSTNARAKIPL........................................................................................................................................................................................................................................................................... 115
7 -6.070sp|Q0VDI3|CE028_HUMAN Transmembrane protein C5orf28 OS=Homo sapiens GN=C5orf28 PE=2 SV=1  ali   8  16...................................STESLISSLGLGAFCLVADRLLQFSTIQQNDW-----------ALSD-VIGMWS------------WAV---VTGIKKKTDFGEIILAGFLASVIDVDHFFLA............................................................................................................................................................................................................................................................................................ 98
8 -6.070sp|Q9HBA0|TRPV4_HUMAN Transient receptor potential cation channel subfamily V member 4 OS=Homo sapiens GN=TRPV4 PE=1 SV=2  ali   18  9.....................................................................................................WAYGPVYSSLYSSLDTCGEEASVLEILVYNSKI--------NRHEMLAVEPINELLRDKW..................................................................................................................................................................................................................................................................... 63
9 -5.690sp|Q9H1D0|TRPV6_HUMAN Transient receptor potential cation channel subfamily V member 6 OS=Homo sapiens GN=TRPV6 PE=1 SV=2  ali   25  2....................................................................................................QWTYGPLTSTLYTEIDSSGDEQSLLELIITTKKR--------EARQILDQTPVKELVSLKW..................................................................................................................................................................................................................................................................... 56
10 -5.340sp|O43861|ATP9B_HUMAN Probable phospholipid-transporting ATPase IIB OS=Homo sapiens GN=ATP9B PE=2 SV=4  ali   10  54.....................................................NVFTFIPGVLYEQFKFFLNLYFLVISCSQFVPALYWAPL.......................................................................................................................................................................................................................................................................................................................................... 99
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;