current user: public

If you have questions about the server, please let us know.

Query: sp|Q5VV42|CDKAL_HUMAN CDK5 regulatory subunit-associated protein 1-like 1 OS=Homo sapiens GN=CDKAL1 PE=1 SV=1, from H.sapiens

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .
# Score Template Links and tools%idFirst MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTKDFRNGLGNQLSSGSHTSAASQCDSASSRMVLPMPRLHQDCALRMSVGLALLGLLFAFFVKVYNLast
1 -5.520sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1 SV=1  ali   16  1............................................................................................................................................................................................................................................DTLCSLGQVAHRGMEKFVFTQEEVQASGLQERDMQLGFLRALPEL-------------------------GPGGDQQSYEFFHLTLQAFFTAFFLVLDDRVGTQELLRFFQEWMP--PAGAATTSCYPPF..................................................................................................................................................................................................................... 105
2 -5.310sp|Q4VC12|ZMY17_HUMAN Zinc finger MYND domain-containing protein 17 OS=Homo sapiens GN=ZMYND17 PE=2 SV=2  ali   12  1...................................................................................................................................................................................................................................................DVRRTGGSTVHVVG----ASHVETFLTRPGDYDELGYMFPGHLGLRVVMVGVDVATGFSQSTSTS--------------PLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHSSPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTH........................................................................................................................................................................ 150
3 -5.080sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2  ali   11  1...........................................................................................................................................................................................................................................QKLILEYTNTATALLYEILLVFQQGNLGLGSTKFAISWIMSFLQSCPPIITFVASIVKQVVRGLSASFQLLSPCQAVLLYQQFYISCLRHSRTLAEYIRNNYREE--------FRYFIHMPALQKRLPLCYP-------QPTIQLFHEV................................................................................................................................................................................................... 138
4 -4.950sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=3  ali   29..........................................................................................................................................................................................................................PFCLKPILHGKILYTPNTPEINKVIQKANYTFYIVDKLKTLSETL-----LEMSSLFQRSGSG------------------QMFNQLQEALRNKFVRNFVENQLHIDVDKLTEKLQDEMFNHAGAGRFRFLGSILVNLSVALNRFQALQSVDILE.............................................................................................................................................................................................................. 187
5 -4.610sp|Q9HC29|NOD2_HUMAN Nucleotide-binding oligomerization domain-containing protein 2 OS=Homo sapiens GN=NOD2 PE=1 SV=1  ali   2............................................................................................................................................................................................................................................PTLLHLGRLALWGLGMYVFSAQQLQAAQVSPDDISLGFLVRAKGV---------------------------PGSTAPLEFLHITFQCFFAAFYLALSADVPPALLRHLFNCGRAEPHNLQITAAFLAGLLSREHWGL----------------LAECQTSEKALLRRQACARWCLARSLRKHFHSIPPAAPGEAKSVHAMPGFI.......................................................................................................................................... 197
6 -4.490sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2  ali   10  2...........................................................................................................................................................................................................................................RKMVGTLGRLAFHGLLKYVFYEQDMKAFGVDLALLQGAPCSCFLQREETLAS------------------------SVAYCFTHLSLQRAIFDLFTESGVSWPRLGFLTHFRSMQAEDGRLDVFLRFLSGLLSPRVNALLAGS......................................................................................................................................................................................................... 140
7 -4.280sp|P59044|NALP6_HUMAN NACHT, LRR and PYD domains-containing protein 6 OS=Homo sapiens GN=NLRP6 PE=2 SV=2  ali   11  10.......................................................................................................................................................................................................ENETLFALCFVPFVCWIVCTVLRQQLELGRDLSRTSKTTLRNLCRLAREGVRRAQFAEKELEQLELRGSKVQTLFLSKKELP-------------------------GVLETEVTYQFIDQSFQEFLAALSYLLVPRTAAGGVGTLLRGDAQPHSHLVLTTRFLFGLLSAERMRDIERHMVSERVKQEALRWVQGQGQGCPGVA................................................................................................................................................................................ 223
8 -4.060sp|Q86W28|NALP8_HUMAN NACHT, LRR and PYD domains-containing protein 8 OS=Homo sapiens GN=NLRP8 PE=2 SV=2  ali   12  4...................................................................................................................................................................................................................................................HLAADSMRKWVLGKEDLEEAKLDQTGVTAFLGMSILR--------------------------RIAGEEDHYVFTLVTFQEFFAALFYVLCFPQRLKNFQRLIASPRGSKSYLSHMGLFLFGFLNEACASAVEQSKVSFGNKRKLLKVIPLLHKCDPPSPGSGVPQ.......................................................................................................................................................................... 156
9 -3.980tr|F5H8E8|F5H8E8_HUMAN Uncharacterized protein OS=Homo sapiens GN=MICAL2 PE=4 SV=1  ali   17........................................................................................................................................................................................................................................................................................................................DLCNWMQGLLQAAGLHIRD------NAYNYCYMYELLSLGLPLLWAFSEVLAAMYRESEGSLESICNWVLR.................................................................................................................................................................................................... 81
10 -3.860sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3  ali   56.....................................................................................................................................................................................................................................ETDPAYQNIIVNLLTIIGNSMGLVNAYSHKFIKYCTMTEKAKIMSMKISSMGELTSKEFEAILNR---FRNYFRHIVNMAIEKRI-GIFNVVVESSLQQLECDPTEIEEFLEHFIFLNAISSKISKLEKEFLTMIHISEEQIAIFQVLLLKFSQLKSSMKLS----------KINKDTAITKFRDNLEACISGLHVDVGNLKAKI................................................................................................................................................. 257

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.