Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5, from H.sapiens

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370
# Score Template Links and tools%idFirst EEAGARVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQADQELLast
1 -8.6905sv0_B mol:protein length:244 Biopolymer transport protein ExbB  ali model follow..  13  108........................................................................................................................KERTSFRLER--RVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNS-QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLLLQSR.......................................................................................................................................... 222
2 -7.0706ezv_X mol:protein length:396 Non-hemolytic enterotoxin lytic component L1  ali model follow..  8  120...................................................................KADPTASGKDNTTVQQASQIMTALSS-QVSGIEATVKGMNKELSDWGVKMQAAHDDLVNGATDIESMNNAIDNNRAAIE-KDLVYAQVAVGVGIFMLAGVALTVATAGTAAAVSGGIA----AVGAASIIAGGVTWGVLQNQIDDDYDSIAQEQKQKAEDQQQII-ALQGLSNASSAVVSAIETSTSVLSDFETT------------------------------TVFGNELDDVVTKLNNGASMQSIIMEKVMSDAAKNEWDDA-----VELAKQLASAKIAIETKELAPAV........... 386
3 -6.5301o5h_A mol:protein length:214 Formiminotetrahydrofolate cyclodeaminase  ali model follow..  10  25.........................................................................................................................................................................KPTPGGGAVGSVVGAMACALAEMVANFTRK--------------KKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKSSEGELQNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASTLNAADLCHAVFQVEKVNVLI--------NLKEISDETFRKNMLEELEEQEAQIEGCYQLEGIVWSSK.. 208
4 -6.5205iji_A mol:protein length:236 Nitrate/nitrite sensor histidine kinase NarQ  ali model follow..  10  6...........................................................................................................................................................PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFVVAPLNQLVTASQRIEHGQDTNLPNELGLLAKTFNQMSSELHKLYRSLE..... 230
5 -6.3506ff6_A mol:protein length:249 BRIC1  ali model follow..  8  9.....................................................................................................VPRGSHMFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFG---------LQYAVELMENMLDFA-------RGEMQLNTDIINLFLELKDL--MQRMLDYYKNKPQSFYQAFFDMADVMLKVMEQLLKLLVPESPDAAMLNAIFRAAHFIKGAAGTFGFTILQETTHLMENLLDEARRGEMQLNT--DIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALEAK................... 243
6 -6.2603wxx_B mol:protein length:219 AopB  ali model follow..  6  80....................................................................................................................LADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGV--AAVGAMMIVGGAVGVANMAIQQAAADGRISPETMKVLGPIMIAAEILVAIVSIAVT....................................................................................................................................... 198
7 -6.2403rg8_A mol:protein length:159 Phosphoribosylaminoimidazole carboxylase, PurE protein  ali model follow..  8  11...............................................................................................SSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG---FVDGFVKGATIAIYSSLRMPSGISPALVLEPKNAALLAARSLYDKEIADSVKSYMESNAQKIIEDDSKLKR.......................................................................................................................................... 159
8 -6.2105b0h_A mol:protein length:135 Leukocyte cell-derived chemotaxin-2  ali model follow..  15  30......................................................................................................................................AQRSQRPHQGVDVLCSAGSTVAPFTGMIVGQEFYIKPIKYKGPI---KKGEKLGTLLPLQKVYPGIQSHV....................................................................................................................................................................... 121
9 -6.1503dyj_A mol:protein length:332 TALIN-1  ali model follow..  7  49.......................................................................................................ETFADHREGILKTAKVLVEDTKVLVQNAAGSQEKLAQ-----AAQSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVFMATAKAVAAGNSCRQEDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRALHYG-CANGYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQAAEAMKGT... 332
10 -5.9005bqn_A mol:protein length:885 Botulinum neurotoxin type D,Botulinum neurotoxin type D  ali model follow..  9  608...........................................................................................................................ANEVVEDFTTNIMKKDTLDKISDVSVIIGPALNIGNSA----NFNQAFATAGVAFLLE----GFPEFTIPALGVFTFYSSIQEREKIKTIENCLEQRVKRWKDSYQWMNWLSRITTQFNHINYQMYDSLSYQADAIKAKID-------------LEYKKYSGSDKENIKSQVENLKNSLDVKISEAMNNINKFIRECSVTYLFKNMLPKVIDELNKFDLRTKTEINLIDSHNIILVGEVDRLKAKVN. 843
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.