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Query: sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EEAGARVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQADQELLast
1 -5.980d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  18.........................................................................................................................................................................KPTPGGGAVGSVVGAMACALAEMVANFTRK--------------KKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKSSEGELQNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASTLNAADLCHAVFQVEKVNVLI--------NLKEISDETFRKNMLEELEEQEAQIEGCQRVKKMLEG.... 195
2 -5.580d4q4hb1 f.37.1.0 (B:10-339) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  14  98..................................................................................................................DVVFRLRKELFEKLQRVTPHGDIISRVINDVDNINLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTL-----SIVPLTVLITQIVS--------SQTRKYFYENQRVLGQLNGIIEEDISGL--------TVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG--VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNE---------LSNQFNMIQMALASAERIFEILDLEEE. 330
3 -5.440d5mkka1 f.37.1.0 (A:11-336) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  15  94..................................................................................................................RVLFDLRSDLFAKLMRLNPVGRLMTRVTSDVDAINITGGLVGVIADLFTLVGLLGFMLFLSPKLTLVVLLVAPVLLAVTTWVR-------------LGMRSAYREMRLRLARVNAALQENLSGV--------ETIQLFVKEREREEKFDRLNRDLFRAWVEIIRWFA--LFFPVVGFLGDFAVASLVYYGGGEVVRGAVSLGLLVAFVDYTRQLFQPLQD---------LSDKFNLFQGAMASAERIFGVLDTEEE. 326
4 -5.430d3rg8a_ c.23.8.0 (A:) automated matches {Treponema denticola [TaxId: 158]}  ali model 3D-neighbors follow..  10  10...............................................................................................SSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG---FVDGFVKGATIAGISPALVLEPKNAALAARIFSLYDKEIADSVKSYMESNAQKIIEDDSK..................................................................................................................................................... 155
5 -5.290d4a82a1 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  91..................................................................................................................KILYDIRKKLYNHLQALNQVGQVISRVINDVEQTKILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF-------------GRLRKLTRERSQALAEVQGFLHERVQGI----------------------------------SVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD. 323
6 -5.180d1f0la3 f.1.2.1 (A:201-380) Diphtheria toxin, middle domain {Corynebacterium diphtheriae [TaxId: 1717]}  ali model 3D-neighbors follow..  12  91...................................................................................................................................SETADNLEKTTAALSILPGIGSVMGIADGAIVAQSIALSSLMVAQAIPLVGELVDIGFA--AYNFVESIINLFQVVHNSYN............................................................................................................................................................... 176
7 -5.120d5ae0a_ d.61.1.3 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  1......................................................KDFLPLYF---GWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKF---AAGAEEYAQQEVVKRSYGKAFK-----LSISALFVTPKTAGAQVVLTRAHVTLGCAADVQPVQTDLLDILQQVKGGSQGEAVGELPRGKLYSLGK.............................................................................................................................................. 195
8 -5.100d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  7  86..................................................................................................................KVVMTMRRRLFGHMMGMQSTGTLLSRITYDSEQVASSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS-------------KRFRSISKNMQNTMGQVTTSAEQMLKGH--------KEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS--ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKS---------LTNVNAQFQRGMAACQTLFAILDSEQE. 318
9 -5.020d2b5la3 a.297.1.1 (A:1044-1140) DDB1 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  46...............................................................................................................................................................................................................................................................................................................................ID--DLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRI 96
10 -4.880d3v4na2 c.95.1.2 (A:168-383) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  12  94..........................................................................................................................................ARYEESIIYSRRVGN-LYTGSLYLGLISLLATTLTAGNQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLD.......................................................................................................................................... 189
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.