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Query: sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPALQASLDKFLSHVISALVSEYRLast
1 -68.100d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  60  2..LSPADKTNVKAAWGKVGAHAGEYGAEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141
2 -64.700d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  36  1.AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYKDYSAAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTE-FSPDTHCAVDKLLSAICQELSSRYR 140
3 -60.400d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}  ali model 3D-neighbors follow..  21  1MVLSEGEWQLVLHVWAKVEADVAGHGQDIYIRLFKSHPETLEKFDRFAEMKASEDLKKQGVRVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYK 148
4 -60.300d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}  ali model 3D-neighbors follow..  29  1VEWTDKERSIISDIFSHMDYD--DIGPKALSRCLVVYPWTQRYFSGFGNLYSNANVAAHGIKVLHGLDRGMKNMDNIADAYTDLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVSALGKQYH 146
5 -57.100d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  33  1VHWTQEERDEISKTFQGT--DMKTVVTQALDRMFKVYPWTNRYFQKRT----DFRSSIHAGIVVGALQDAVKHMDDVKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAISKQYH 136
6 -56.400d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}  ali model 3D-neighbors follow..  33  1VKLSEDQEHYIKGVWKDVDHK--QITAKALERVFVVYPWTTRLFSKLQGLANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH 141
7 -55.800d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  31  2.ELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMERSPQLRKHACRVMGALNTVVENLHDPDKVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYK 151
8 -55.500d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  23  1....RPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAMSRGWD 147
9 -54.800d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  15  2.TLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLAQLQDNPKMKAQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAKLHRGIRASDLRTAYDILIHYMED--HNHMVGGAKDAWEVFVGFICKTLGDYMK 148
10 -54.800d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]}  ali model 3D-neighbors follow..  21  2..FTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKPLEQNPKLKPHAMTVFVMTCESAVQLGKVTVRESNLKRLGAIHNGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMK 150
11 -54.200d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]}  ali model 3D-neighbors follow..  20  1.....ADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKFADIAGNAAVSAHGATVLKKLGELLKAKGSHAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAG--LDAGGQTALRNVMGIIIADLEANYK 140
12 -53.500d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}  ali model 3D-neighbors follow..  21  1.GLSAAQRQVVASTWKDIADNGAGVGKECLSKFISAHPEMAAVFGFSGA--SDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYGDISGALISGLQ 146
13 -52.400d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  17  1..IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLF--------QNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA... 131
14 -52.200d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  18  1..MTREEIKMIQKSWLRVIDKMDEAGLLFYRRLFDVEPKVRPLF--------KIDIEKQGRKLMDVLNWIVLNLQDIDAALDAARELARRHYGVKAEHYPVVGHTLIWTLRKMIGSEWTKQLEQLWTQAYEALAQVMIEEH. 133
15 -52.000d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}  ali model 3D-neighbors follow..  23  10GDLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMSQLRSSRQMQAHAIRVSSIMSEYVEELDS-DILPELLATLARTHNKVGADHYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQAVLLVKH. 156
16 -52.000d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}  ali model 3D-neighbors follow..  18  1.SLSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHFGVGSAQFENVRSMFPGFVASVAA--PPAGADAAWTKLFGLIIDALKAAG. 145
17 -51.700d1x3ka_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  10  3VGLSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLDEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSGPHRPITHGSYNDLRGVIYDSMH------LDSTHGAAWNKMMDNFFYVFYECLD 145
18 -51.200d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  1..MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFPPLEELSGNARFRAHAGRIIRVFDESIQVLGDLEKLDEIWTKIAVSHRTVSKESYNQLKGVILDVLTA--ASSLDESQAATWAKLVDHVYAIIFKAID 147
19 -50.500d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}  ali model 3D-neighbors follow..  19  8AQLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHRKISAAEFGKINGPIKKVLA---SKNFGDKYANAWAKLVAVVQAAL..... 146
20 -50.200d3ozua1 a.1.1.0 (A:1-150) automated matches {Ralstonia eutropha [TaxId: 381666]}  ali model 3D-neighbors follow..  16  2..LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAHPELKNVFN-----MAHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKNIANKHLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMES 138
21 -50.200d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  15  1.SLSAAQKDNVKSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHRGISAGQLEAAFKVLAGFMKSYGGD------EGAWTAVAGALMGMIRPDM. 142
22 -49.300d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]}  ali model 3D-neighbors follow..  15  1..MNSEEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFDDLPENARFKTHGTRILRQVDEGVKALSGDKKFDDVWKKLAQTHKKVERRSYNELKDIIIEVVCSCVK--LNEKQVHAYHKFFDRAYDIAFAEMA 148
23 -49.100d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  15  1...TKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM-----EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHLGVKEEHYPIVGACLLKAIKNLLN--PDEATLKAWEVAYGKIAKFYIDIEK 134
24 -48.500d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  18  2..CTSLNRLLVKRQWAEAGTNRELLGNRIWEDLFANMPDARGLFSRVNNDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQHRGIPAAGYPAFVASAISAVRATVGARSFDN--DAWNSCMNQIVSGISG... 142
25 -48.300d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  18  9PTLTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKFSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEILKDLSQKHKTVFKVDSIWFKELSSIFVSTIDGGA----------EFEKLFSIICILLRSAY. 146
26 -47.800d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  18  2..CLVTESLKVKLQWASAAHERVAFGLELWRDIIDDHPEIKAPFSRVRDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHRNLKPEFFDIFLKHLLHVLGDRLGTHFDFG---AWHDCVDQIIDGI..... 139
27 -47.700d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}  ali model 3D-neighbors follow..  13  1.GLTAAQIKAIQDHWFNIKGCLQAAADSIFFKYLTAYPGDLAFFHKFYGLRSNPAYKAQTLTVINYLDKVVDALGGAGALMKAKVPSHDA-MGITPKHFGQLLKLVGGVFQEEFS--ADPTTVAAWGDAAGVLVAAM..... 140
28 -46.800d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}  ali model 3D-neighbors follow..  15  1..LSADQISTVQASFDKVKGD----PVGILYAVFKADPSIMAKFTQFESIKGTAPFETHANRIVGFFSKIIGELPNIEADVNTFVASHKP-RGVTHDQLNNFRAGFVSYMKAHTD---FAGAEAAWGATLDTFFGMIFSK.. 135
29 -46.300d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]}  ali model 3D-neighbors follow..  10  1.TLTKHEQDILLKELGPHPAHIVETGLGAYHALFTAHPQYISHFSRLENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAVEKFLKHVFPMMAAEI..... 147
30 -46.100d2zs0a_ a.1.1.0 (A:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  17  2..CNRLEQILVKTQWAQSAENRAAFSRDLFSELFNIQGSSRALFSGVGDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAGQHRNLDASNFAAMGQAVMSVVPTHLD----CFNQHAWGECYERIASGISG... 140
31 -46.100d2zs0d_ a.1.1.0 (D:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  16  3..CSRGDAEVVISEWDQVGSSESAIGVAIFDVFFTSSGVSPSMFPGGGDS-SSAEFLAQVSRVISGADIAINSLTNRATCLSHLNAQHKAISGVTGAAVTHLSEAISSVVAQVLPSAHID----AWGYCMAYIAAGIGAG.. 144
32 -46.100d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  22  5..CSEEDHRIVQKQWDILWRDTEGFGRLLLTKLAKDIPEVNDLFKRVDEHAEGPKFSAHALRILNGLDLAINLLDDPPALLDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLD----DYDALAWKSCLKGILTKISSR.. 148
33 -45.400d1x46a_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  17  5VDMEAGDIALVKSSWAQIHDK----EVDILYNFFKSYPASQAKFSAFESLKDTAPFALHATRIVSVINEAIGVAENRPALKNVLKQQGINHRGVTAAHFEEFETALEAFLES-HASGYNAGTKKAWDSAFNNMYSVVFPEL. 150
34 -45.400d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}  ali model 3D-neighbors follow..  10  1...ANKTRELCMKSLEHASNEARQDGIDLYKHMFENYPPLRKYFKSREDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHARDHVHMPPEVWTDFWKLFEEYLKTTLDEPTKQAWHEIGREFAKEINK... 147
35 -45.300d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  3.CCSSEDRANVMHNWDAASDRRVALAQAVFASLFSRDAAAQGLFSGVSDNPDSADFRAHCVRVVNGLDVAINMLNDPAVLLAHLSAQHQARAGVAAAHFDVMAEAFAEVMPQV----SSCFSSDSWNRCFARIANGISAGL. 147
36 -44.200d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  12  3..NRQEISDLCVKSLEGREAQNIENGNAFYRYFFTNFPDLRVYFKGADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYVRETINRHYKMDPALWMAFFTVFTGYLESVGS--LNDQQKAAWMALGKEFNAESQTHLK 151
37 -43.700d3wctd_ a.1.1.0 (D:) automated matches {Lamellibrachia satsuma [TaxId: 104711]}  ali model 3D-neighbors follow..  17  2..CSEADATIVIKQWNQIAKSRWTMGNEIFSSLFKLKPESEVLFNNVNANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPS-LIDNFNPD---AWRNCLLPLKNAIAKGL. 146
38 -43.000d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]}  ali model 3D-neighbors follow..  15  2..........FKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKSSLTTGNFEKFFVALVEYMRAS----GQSFDSQSWDRFGKNLVSALSSAGM 136
39 -38.800d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  1.....NAADRVMQSYGRCCAS-TGFFDDFYRHFLASSPQIRAKFA-------TTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHSRLDIRPELYDLWLDALLMAVAEHDRD-CDAETRDAWRDVMGRGIAVIKSYY. 129
40 -34.100d2xkia_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]}  ali model 3D-neighbors follow..  22  2............VNWAAV-------VDDFYQELFKAHPEYQNKFGALGSLKGNAAYKTQAGKTVDYINAAIGGSADAAG----LASRHKG-RNVGSAEFHNAKACLAKAC----SAHGAPDLGHAIDDILSHL......... 110
41 -10.700d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  32VRLGDAELYVLEQLQPLIQENIVNIVDAFYKNL-DHESSLMDIINDHSSVDRKQTLKRHIQEMFAG--------DEFIEKRNRIASIHL-RIGLLPKWYMGAFQELLLSMIDIYEASITNKAIKATTKILNLEQQLVLE... 169

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.