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Query: sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRIALRYYNQSEAGSHTWQTMYGCDLGPDGRLLRGHNQLAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGKGGSYSQAASSDSAQGSDVSLTALast
1 -63.600d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}  ali model 3D-neighbors follow..  88  1GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQR............................................................................................................................................................. 181
2 -58.000d1t7va2 d.19.1.1 (A:5-183) Zinc-alpha-2-glycoprotein, ZAG {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28  2GRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDRKSQPMGL--WRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYKDSTGSHVLQGRF--GCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKAYLEEECPATLRKYLKYSKNILDR............................................................................................................................................................ 179
3 -56.500d1de4a2 d.19.1.1 (A:4-181) Hemochromatosis protein Hfe, alpha-1 and alpha-2 domains {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  2.SHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTP-WVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILG--CEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLD............................................................................................................................................................. 178
4 -54.500d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  100  1.....................................................................................................................................................................................ADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP.............................................................. 95
5 -53.900d3p73a2 b.1.1.0 (A:178-273) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  36  1....................................................................................................................................................................................RRVQPEVRVWGKE-ADGILTLSCHAHGFYPRPITISWMKDGMVRDQETRWGGIVPNSDGTYHASAAIDVLPEDGDKYWCRVEHASLPQPGLFSWEPQ............................................................. 96
6 -53.100d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2 domains {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  3PRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRQEADPCGA-WIWENQVSWYWEKETTDLKSKEQLFLEAIRTLENQINGTFTLQGLL-----GCELAPDNSSLPTAVFALNGEEFMRFNPRTGNWSGEWPETDIVGNLWMKQPEAARKESEFLLTSCPERLLGHLERGRQNLE............................................................................................................................................................. 177
7 -52.400d1kcgc_ d.19.1.1 (C:) Class I MHC-related molecule Ulbp3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2.AHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGH-LEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRM--SCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKKRLE............................................................................................................................................................. 178
8 -52.000d1iakb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}  ali model 3D-neighbors follow..  31  1....................................................................................................................................................................................RLEQPSVVISRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVYTCHVEHPSLTSPITVEWRA.............................................................. 98
9 -51.800d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}  ali model 3D-neighbors follow..  31  1.....................................................................................................................................................................................TRPPSVQVAKTTPFNEPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPG............................................................. 98
10 -51.800d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}  ali model 3D-neighbors follow..  38  1.....................................................................................................................................................................................TVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVP................................................................. 93
11 -51.400d2wy3a_ d.19.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2EPHSLRYNLMVLSQDESVQSGFLAEGHLDGQPFLRYDRQKRRAKPQGQ-WAEDVLGAETWDTETEDLTENGQDLRRTLTHIKDQKGG-----LHSLQEIRVCEIHEDSSTRGSRHFYYNGELFLSQNLETQESTVPQSSAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQRYLKSG.................................................................................................................................................................. 176
12 -50.900d3dbxa2 b.1.1.0 (A:188-283) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  29  1.....................................................................................................................................................................................RVPPMAVVFARTAGQVQLLLVCRVTSFYPRPIAVTWLRDGREVPPSLSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDSLLVPW................................................................ 96
13 -50.500d1iaka1 b.1.1.2 (A:82-181) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}  ali model 3D-neighbors follow..  24  2....................................................................................................................................................................................TNEAPQATVFPKSPVGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWEPE............................................................. 100
14 -50.300d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  34  1.....................................................................................................................................................................................KEPPSMRLKARPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN--CSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLAQPLTVDL................................................................ 91
15 -49.600d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}  ali model 3D-neighbors follow..  27  1.......................................................................................................................................................................................SPQLEVERRSSGEGGMRLRCFARDYYPADLEIRWWKDDGGGQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIATGLELIVRWK............................................................... 98
16 -49.300d3g08a2 b.1.1.2 (A:186-279) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  27  1.....................................................................................................................................................................................QEKPVAWLSSVPSSHGHRQLVCHVSGFYPKPVWVMWMRGDQEQ-QGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILY................................................................ 93
17 -49.200d4pp8c_ d.19.1.1 (C:) NK cell ligand RAE-1 beta {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  1..HSLRCNLTIKDPTPADPLWYEAKCFVGEILILHLSNINKTMTSGD--PGETANATEVKKCLTQPLKNLCQKLRNKVSNTKVDTHKTNGYPHLQVTM--IYPQSQGRTPSATWEFNISDSYFFTFYTENMSWRSANDESGVIMNKWKDDGEFVKQLKFLIHECSQKMDEFLKQ.................................................................................................................................................................... 168
18 -48.300d1k5nb1 b.1.1.2 (B:1-99) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  2.....................................................................................................................................................................................QRTPKIQVYSRHPAEKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRD............................................................. 98
19 -47.800d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1....................................................................................................................................................................................SRGFPIAEVFTLKPLEKPNTLVCFVSNLFPPMLTVNWHDHSVPV-EGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPDRYTAIAYWVPRNALPS........................................................ 103
20 -44.000d3jvga1 d.19.1.0 (A:6-180) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  1.SHMLKLLHFATFQN-STSVLVGGLGLLGDVKMGSLDSRTGNIRYYRP-WLRPSLPKGDWDVIESSIKSYVRDFSRLVQMYTTVPYP------FVFQSSIGCELQSNGTIRTFFDIAYEGQNFLRFNLDAGTWDQMQHNQLSAKHLMANASTLNEVIQVLLNDTCVDILRLFIQAGKADLER............................................................................................................................................................ 175
21 -43.800d2nw2b2 b.1.1.0 (B:119-247) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  1.................................................................................................................................................................................DLNKVFPPEVAVFEPSEAEQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTKEQPALNDSRYALSSRLRVSATFRNHFRCQVQFYGLSENDEWTQDRAKPVTQI....................................................... 119
22 -42.800d4q9ca_ b.1.1.0 (A:) automated matches {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}  ali model 3D-neighbors follow..  21  1...................................................................................................................................................................................VEPTKPHLRLLPPSPEESSATLTCLIRGFYPDKVSVSWQKDDVSVSANVTNFPTALEQDLTFSTRSLLNLTAVEGAKYTCTASHPPSQSTVKRVIRNQ............................................................. 105
23 -42.600d3g08a1 d.19.1.0 (A:7-185) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  1.NYTFRCLQMSSF-ANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKP-WSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGC-EMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEK............................................................................................................................................................ 179
24 -42.200d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1 and alpha-2 domains {Murine cytomegalovirus [TaxId: 10366]}  ali model 3D-neighbors follow..  15  1.ESGLRYAYTLVVDGTANTRRCFGTGHVDGEAFVGYSNNKTHGIG----RWVNASHVEEENKEF---VRQCKELQAELDKMQNNSKVIG---------VKTVQLDVGCTSKIEKHYAYDGNETEDDTATSASERDRDCQKKLTEYRKLVLAS.......................................................................................................................................................................................... 135
25 -42.000d4q97a1 b.1.1.0 (A:137-241) automated matches {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}  ali model 3D-neighbors follow..  21  2...................................................................................................................................................................................IPPSPPIVSLLHSATEERFVQLVCLISGYYPENIAVSWQKNTKTITSGFATTSPVKTSSNDFSCASLLKVPLQEWSRYSCQVSHSATSSNQRKEIRS.............................................................. 105
26 -41.900d3dbxa1 d.19.1.0 (A:7-187) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  7  3ESQFFQLFYTLLL-GNVSSTELTGMALLADVPIMVLDPHTWNLNICRP-WVQEITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLD---YPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYELSRERWVPQRSTAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLER............................................................................................................................................................ 181
27 -41.400d4jvwa_ b.1.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  28  1.....................................................................................................................................................................................KHPPAVYLLPPAREQESATVTCLVKGFSPADISVQWLQRGQLLPQETSAPMPEPGAPGFYFTHSILTVTEEEGETYTCVVGHEALPHLVTERTVDKST........................................................... 108
28 -41.200d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  19  1...................................................................................................................................................................................RADAAPTVSIFPPSSTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWDQDSKDSTYSMSSTLTLTKDEYERYTCEATHKTSTSPIVKSFNRNE............................................................ 106
29 -41.100d4jvua1 b.1.1.0 (A:225-337) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  4...................................................................................................................................................................................VAEMNPNVNVFVPPRDGRKSKLICEATNFTPKPITVSWLKDGKLVESGFTTDPVTGSTPQTYKVISTLTISEIDLNVYTCRVDHRGLTFLKNVSST............................................................... 112
30 -40.900d4lfhg2 b.1.1.2 (G:126-238) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  1................................................................................................................................................................................KQLDADVSPKPTIFLPSIAEKAGTYLCLLEKFFPDVIKIHWQEKKSNTILGSQEGNTMKT-NDTYMKFSWLTVPEESDKEHRCIVRHENNKNGVDQEIIFPPIKTD........................................................ 110
31 -40.900d2w59a2 b.1.1.0 (A:452-566) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  21  2.....................................................................................................................................................................................TTPPLIYPFAPHPEESRVTLSCLVRGFRPRDIEIRWLRDHRAVPATERTANGAGGDGDTFFVYSKMSVETAKGTVFACMAVHEALPMRFSQRTLQKQA........................................................... 115
32 -40.700d1lqva_ d.19.1.1 (A:) Endothelial protein C receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1GLQRLHMLQISYF-RDPYHVWYQGNASLGGHLTHVLEGPDTNTTIIQLQPL---QEPESWARTQSGLQSYLLQFHGLVRLVHQERTLAFP--LTIRCFLGCELPPEGSRAHVFFEVAVNGSSFVSFRPERALWQADTQVVTFTLQQLNAYNRTRYELREFLEDTCVQYVQKHIS.................................................................................................................................................................... 172
33 -40.300d4lldb_ b.1.1.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  1...................................................................................................................................................................................QPKAAPSVTLFPPSSEENKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQHRSYSCQVTHEGSTVEKTVA................................................................. 100
34 -40.200d5wl1a1 d.19.1.1 (A:4-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1b [TaxId: 9606]}  ali model 3D-neighbors follow..  11  3GPTSFHVIQTS-SFTNSTWAQTQGSGWLDDLQIHGWDSDSGTAIFLKP-WSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIA---GCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQR............................................................................................................................................................ 180
35 -39.400d2wqra3 b.1.1.0 (A:439-545) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  2.....................................................................................................................................................................................RAAPEVYAFATPESRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHTTQPRKTKGSGFFVFSRLEVTRAEKDEFICRAVHEAASPSQTVQRAVSVN........................................................... 106
36 -38.700d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  1....................................................................................................................................................................................QPREPQVYTSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE-NNYKTTPPVLDSDGSFFLYSKLTVDKSRGNVFSCSVMHEALHNHYTQK................................................................. 98
37 -38.600d2mklc1 b.1.1.0 (C:3-105) automated matches {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}  ali model 3D-neighbors follow..  18  1....................................................................................................................................................................................RQTDISVSLLKPPFEEQTATIVCEIVYSDLENIKVFWQVNGVERKKGVETQNP-EWSGSKSTIVSKLKVMASEWDSYVCLVEDSELPTPVKASIRKA............................................................. 103
38 -38.300d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  2....................................................................................................................................................................................SASAPTLFPLNSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPS-VLRGGKYAATSQVLLPSKDDEHVVCKVQHPNGNKEKNVPLP............................................................... 104
39 -38.100d4q9ba_ b.1.1.0 (A:) automated matches {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}  ali model 3D-neighbors follow..  16  1......................................................................................................................................................................................SEIAVLLRDPTVEEKSATLVCEVLSTVSAGVVVSWMVNGKVRNEGVQ-MEPTKMSGNQYLTISRLTSSVEEWQSYTCSAKQDQSSTPVVKRTRKA............................................................. 101
40 -38.100d4lfhd2 b.1.1.0 (D:121-206) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  2...................................................................................................................................................................................QPHTKPSVFVMKNG-----TNVACLVKEFYPKDIRINLVSSKKITEFDP---AIVISPSGKYNAVKLGKYEDSN--SVTCSVQHDNKTVHSTD.................................................................. 84
41 -37.500d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  22  2....................................................................................................................................................................................KTTAPSVYPLCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA---VLQSDLYTLSSSVTVTSSTSQSITCNVAHPASSTKVDKKIEPRG............................................................ 101
42 -36.600d2wqra1 b.1.1.0 (A:228-330) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  3......................................................................................................................................................................................TPPTVKILQSSCDGPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST-TQEGELASTQSELTLSQKHDRTYTCQVTYQGHTFEDSTKKCAD............................................................. 104
43 -35.800d3m8oh2 b.1.1.0 (H:119-221) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  3....................................................................................................................................................................................SPTSPKVFPLCSTQPDGNVVIACLVQGFFPQELSVTWSESGQGVTARNF-PPSQDASGDLYTTSSQLTLPATQGKSVTCHVKHYTNPQDVTVPC................................................................ 102
44 -35.300d2w59a1 b.1.1.0 (A:349-451) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  24  1.......................................................................................................................................................................................PIQLYAIPPSPGELDAKLRCLVVNLPSSSLSVTWTREKSGNLRPD-PMVLQEHFNGTYSASSAVPVSTQDGERFTCTVQHEELPLPLSKSVYRNT............................................................ 102
45 -35.300d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1.......................................................................................................................................................................................GPSVFLFPPKPKDRTPEVTCVVVDVSHEEVKFNWYVDGVEVHNAK-TKPREEQYNSTYRVVSVLTVLHQDWLNYKCKVSNKALPAPIEKTISKAK............................................................ 104
46 -34.600d2wqra2 b.1.1.0 (A:331-438) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1...................................................................................................................................................................................SNPRGVSAYLSRPSPFDKSPTITCLVVDLAPSKGTVQLTWSRASGKVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEYQCRVTHPHLPRALMRSTTKTS............................................................ 107
47 -34.000d4ba8a1 b.1.1.0 (A:3-102) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  1.......................................................................................................................................................................................DILTFTIADIFLSKSANLTCLVSNLATYELNISWASQSGEPLETK-IKVMESHPNGTFSAKGVASVSVEDWNNFVCTVTHRDLPSPQKKFISK.............................................................. 100
48 -33.900d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2.......................................................................................................................................................................................HPRLSLHRPALEDSEANLTCTLTGLRASGVTFTWTPSSG---KSAVQGPPERDLCGCYSVSSVLPGCAEPWNHFTCTAAYPESKTPLTATLSKSG............................................................ 101
49 -24.300d4hbqa2 b.1.1.4 (A:91-202) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  3.......................................................................................................................................................................................PNQLTVSPAALVPGDPEVACTAHKVTPNALSFSLLVGGQELEGGPEVQQEPIGGDVLFRVTERWRLPPLGTPALYCQATMRLPGLELS................................................................... 100
50 -24.100d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  4.......................................................................................................................................................................................PTPSISDFEIPTSNIRRIICSTSGGFPEP-HLSWLENGEELNAINTTVSQ-DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTA............................................................. 95
51 -18.800d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  3......................................................................................................................................................................................KDPEIHLSGPLEAGKPITVKCSVADVYPDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDGKVLVCRAKLHIDEMDLQVYISP.............................................................. 109
52 -17.300d2crya1 b.1.1.1 (A:8-116) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1.................................................................................................................................................................................TLTVNGPPIISSTQTQHHGEKGQIKCFIRS-TPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNDFQTIYNCTAWNSFGSDTEIIRLK............................................................... 103
53 -17.300d5e5ub1 b.1.1.0 (B:119-222) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  11  17.................................................................................................................................................................................................REGQGVVLLCGPPPHFGE-LSYAWTFNDSPLYVQEDKRRFVSQDTGNLYFA---KVEPSDVGNYTCFVTNK.......................................................................... 83
54 -17.200d2yd6a2 b.1.1.0 (A:115-220) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  3...............................................................................................................................................................................REDQIPRGFPTIDMLKVVERTRTATMLCAASG-NPDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSSAPANLYVR................................................................. 106
55 -17.200d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  11  15...............................................................................................................................................................................................KITEGWGVMFTCSPPPHYPA-LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIA---KTEASDLGNYSCFATSHSKFSQLSLAAEDA............................................................. 105
56 -16.900d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}  ali model 3D-neighbors follow..  14  3.....................................................................................................................................................................................IASPAKTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNA.......................................................................... 88
57 -16.800d2v9ta_ b.1.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  1................................................................................................................................................................................SLRQEDFPPRIVEHPSDSKGEPATLNCKAEG-RPT-PTIEWYKGGERVETDKDDPRLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYSHDASLEVA................................................................. 107
58 -16.500d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}  ali model 3D-neighbors follow..  13  1......................................................................................................................................................................................KYPVLKDQPAERENNPTVLECIIEG--DQGVKYSWKKDGKSYNWQ-EHNAALRKDEGSLVFL---RPQASDEGHYQCFAETP.......................................................................... 80
59 -16.200d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  17  8.....................................................................................................................................................................................EEQPAHTLFPEGSAEEKVTLTCRARA--PPA-TYRWKMNGTELKMGPDSRYRLVAGD----LVISNPVKAKDAGSYQCVATNASREASLRF.................................................................. 97
60 -15.600d4u0qb2 b.1.1.0 (B:103-203) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2.......................................................................................................................................................................................PPRVKAVKSSNEGETAMLVCKSES-VPPVTDWAWYKITDSEDKALMNGSFVSSSQGRSELHIENLNMEADPGQYRCNGTSSQAIITLRVR................................................................. 101
61 -15.600d1ie5a1 b.1.1.4 (A:2-107) Neural cell adhesion molecule (NCAM) {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  22  4.................................................................................................................................................................................QVIVNVPPSVRARQSTMNSQSVTLACDADG-FPEP-TMTWTKDGEPIEQEDNEEKYSFNYDG--SELIIKKVDKSDEAEYICIAENK.......................................................................... 91
62 -15.600d5noia1 b.1.1.0 (A:311-416) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1.....................................................................................................................................................................................RAPPQFVVRPRDQIGRTVTFPCETKG-NPQP-AVFWQKEGSQNLLFQPNSRCSVSPTGDLTIT---NIQRSDAGYYICQALTV.......................................................................... 86
63 -15.500d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3.....................................................................................................................................................................................YYPPRVVSLEEPELRLEHCIEFVVRG-NPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFKPTHYNNGNYTLIAKNPLGTANQTINGH............................................................... 95
64 -15.300d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  17  6........................................................................................................................................................................................PTISVPSSVTIGNRAVLTCSEHDGSPP-SEYSWFKDGISMLTAMNSSFTIDPKSGDLIFD---PVTAFDSGEYYCQAQNG.......................................................................... 89
65 -15.100d4ra0c1 b.1.1.0 (C:27-130) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  11..............................................................................................................................................................................................ITGARGLTGTLRCQLQV--GEPPEVHWLRDGQILELADSTQTQVPLGASQLRIT---SLQLSDTGQYQCLVFLGSQPGYVRLE................................................................. 103
66 -15.000d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  7  2.......................................................................................................................................................................................EVQLNIKRNSKTGELFKIECPVKYCVHRP-NVTWCKHNGTIWVPLEVGPQLENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSHSVTIHVR................................................................. 104
67 -15.000d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  11..............................................................................................................................................................................................LAVPPNAPFQLSCEAVG--PEPVTIVWWRGTTKIGGPAPSPSVLNV------------TGVTQSTMFSCEAHNLSRTATVHLQ................................................................. 85
68 -15.000d3bn3b2 b.1.1.0 (B:88-196) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  1.......................................................................................................................................................................................RPDRVELMPLPVGENFTLSCRVPGAGPASLTLTLLRGAQELIRRSFAG----EPPRARGAVLTATVLARREDNFSCRAELDLRPHGLGL.................................................................. 93
69 -14.900d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  15.................................................................................................................................................................................................SANEIDVRPCPLNPNEHKG-TITWYKDDSKTPVSTEQASRIHQHKEKLWF---VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPN........................................................ 99
70 -14.800d5noia2 b.1.1.0 (A:417-509) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  1.......................................................................................................................................................................................PPIILQGPAMQTDGTALLKCKATG-DPLP-VISWLKEGFTFPGRDPRATIQEQGTLQIK-----NLRISDTGTYTCVATSS.......................................................................... 77
71 -14.800d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  16  1....................................................................................................................................................................................RQYAPSIKAKFPADTGQMVTLECFAFG-NPVP-QIKWRKLDGSQTSKWLS------SEPLLHIQ---NVDFEDEGTYECEAENITYQGRIIIH................................................................. 90
72 -14.800d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  9.................................................................................................................................................................................................SQGQPVKLNCSVEG-MEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK-SVERSDAGRYWCQVEDGSQPVWLTVE................................................................. 90
73 -14.500d2v9qa2 b.1.1.0 (A:168-268) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  12..............................................................................................................................................................................................VMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDK---DERITIRGGKLMIT---YTRKSDAGKYVCVGTNMSEVAELTVLERPSFVKAA........................................................ 101
74 -14.500d4u0qb1 b.1.1.0 (B:23-102) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2.........................................................................................................................................................................................GTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKT----------EFKVDSDDQWGEYSCVFLPEPMGT...................................................................... 74
75 -14.400d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1..................................................................................................................................................................................LAPRRCPAQEVARGVLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGSH---PSRWAGMGRRLLLR---SVQLHDSGNYSCYRAGRAGTVHLLVD................................................................. 92
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.