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Query: sp|Q5VV42|CDKAL_HUMAN CDK5 regulatory subunit-associated protein 1-like 1 OS=Homo sapiens GN=CDKAL1 PE=1 SV=1, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTKDFRNGLGNQLSSGSHTSAASQCDSASSRMVLPMPRLHQDCALRMSVGLALLGLLFAFFVKVYNLast
1 -15.400d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  42...................................................................................................................................................................................................VARYPERPLSLYVHI---CHKLCYFCKIVTRQQHKADQYLDALEQEIVHRAPRHVSQLHWGGGTPTYLNKA---QISRLMKLLRENFQFNADAEISIVDPREIELDVLDHLRAEGFNRL----SMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI----STNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKI-SPQQKLDILQETIAFLTQSGYQFIGMDHFARAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGN.................................................................................. 352
2 -13.300d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  39...........................................................................................................................................................................................................VSTLLSIKTGCPEDCKYCPQSSRYKTGLEAEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDM-----PYLEQMVQGVKAMGLEACMTLG--TLSESQAQRLANAGLDYYNHNLDT-----SPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIVGL-GETVKDRAGLLLQLANLP-ESVPINMLVKVKGTPLADNDDVDA----FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGAN........................................................................................................................... 279
3 -10.100d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  13  16...............................................................................................................................................................................................................LSVTDRCNFRCDYCMPKEVFGKNELLTFDEMARIAKVYAELGVKKIRITGGE-------MRRDLDVLIAKL-NQIDGIEDIGL-TTNGLLLKKHGQKLYDAG-----LRRINVSLDAIDDTLFQSINRNIKATTILEQIDYATSIGLNVKVNVVIQKGI---NDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFG--EVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVT................................................................................... 295
4 -5.970d4inza_ c.69.1.0 (A:) automated matches {Bacillus megaterium [TaxId: 1404]}  ali model 3D-neighbors follow..  13  49............................................................................................................................................................................................................................TVALDLRGGLESYEIDVLVEDIRQVIEGGYSSCTLVVHD---WGAGIGWTFAYRYPEYVQKL-----IAFNGPHPYTFMRELRTNKNQQKASEYAKWFQKQEVQ-TADDVQAYMNSWENGSVLSMLSYYRNLKEVLNIPVQIIWG-----NQDPTFMPENLDGIE------------PNISVHRLAEASHAPQHEKPQEVNNVMWNF........................................................................................................................................................ 283
5 -5.710d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  6..........................................................................................................................................................................................................................SHCHLDGLDYESLHKDVDDVLAKAA---ARDVKFCLAVATTLPSYLHMR--DLVGERDNVVFSC----------VHPLNQNDDVEDLRRLAAEEGVVA------ETGLDYYYTPETKVRQQESFIHHIQIGRE------LNKPVIV----HTRDARADTLAILREEKVTDLHCFTEDRETAGKLLDLGSFSGIVTFRNAEQLRDAARYVPLDR--------LLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQ............................................................................................... 244
6 -5.700d5enfa1 a.29.2.0 (A:1315-1435) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  12......................................................................................................................................................................................................................................................................................................................................EELLNLIFQCEDSEPFRQPVDLLE--YPDYR-----IIDTPMDEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKR.................................................................................................................................................. 120
7 -5.480d1reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}  ali model 3D-neighbors follow..  13  9..................................VYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRLITVGGVIPEQDFDELRKGAVEIYGTVIPESAISLVKKLRASLDA................................................................................................................................................................................................................................................................................................................................................................................................................... 168
8 -5.350d4ca1a_ b.8.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  12..................................................................................................................................................................................................................SSGCEELCEFCPCPGASCKWQG-SLDAVMPHLM---HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHR--RRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC...................................................................................................................................................................................................... 192
9 -5.280d4zura_ d.165.1.1 (A:) automated matches {Momordica balsamina [TaxId: 3672]}  ali model 3D-neighbors follow..  34................................................................................EWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLN-ETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGG------YCFI------------NNAAVAAQRLLDKGAKKIAILDVDFH-HGNG--------TQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTP------YSVW-GEALTDSLKRIAAFGAEAIV---VSLGVDTFTSPDYITMGRTIAASGVPLLVVME.......................................................................................................................................................................................... 320
10 -5.260d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  14  2...............................................................................................................................................................................................................................................................................IDIIFPLIQFGEEVSGKKYGEKFETDVALRV-----IADHLRAITFA-IPSNEGRGYVIRRILRRFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKVIQKALLSGKEVFTAYDTYGFPVDLIDEIAREIDLEGFQCELEEQRERARKHF................................................................................................................................................... 192

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.