current user: public

If you have questions about the server, please let us know.

Query: sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPPATLPSSGPLast
1 -68.200d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  100  2.................ELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPPATLPSS.. 172
2 -60.600d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}  ali model 3D-neighbors follow..  29  1................MVLSEGEWQLVLHVWAKVEADVAGHGQDIYIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKQGVRVLTALGAILKKKGH---HEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG................. 154
3 -57.800d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}  ali model 3D-neighbors follow..  26  2........GTLAIQAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMAGMSA-SQLRSSRQMQAHAIRVSSIMSEYVEELDS-DILPELLATLARTHD-LNKVGADHYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQAVLLVKHG....................... 157
4 -57.200d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  13  1................TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAKLHN-NRGIRASDLRTAYDILIHYMED--HNHMVGGAKDAWEVFVGFICKTLGDYMKELS.................... 151
5 -56.400d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  1....................RPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHR-AVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAMSRGWDG...................... 148
6 -55.400d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}  ali model 3D-neighbors follow..  24  1................VEWTDKERSIISDIFSHMDYD--DIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMDN---IADAYTDLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVSALGKQYH....................... 146
7 -55.200d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}  ali model 3D-neighbors follow..  31  1.................SLSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFKGKSV-ADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHV-GFGVGSAQFENVRSMFPGFVASVAA--PPAGADAAWTKLFGLIIDALKAAGA....................... 146
8 -55.000d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}  ali model 3D-neighbors follow..  21  1.........PSVYDAAAQLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGDV---SQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHI-TRKISAAEFGKINGPIKKVLA---SKNFGDKYANAWAKLVAVVQAAL............................ 146
9 -54.900d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]}  ali model 3D-neighbors follow..  24  2..................FTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSP--IPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKRESNLKRLGAIHF-KNGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMK....................... 150
10 -54.300d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  2..................LSPADKTNVKAAWGKVGAHAGEYGAEAYERMFLSFPTTKTYFPHF------DLSHGSAQVKGQGKKVADALTNAVAHVDDMPNA---LSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR....................... 141
11 -54.200d1x3ka_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  17  1..............AFVGLSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLKGHPL-DEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSGPHV-ARPITHGSYNDLRGVIYDSMH------LDSTHGAAWNKMMDNFFYVFYECLDGRCSQFS................ 152
12 -53.800d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  25  1.................AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYK------DYSAAGAKVQVHGGKVIRAVVKAAEHVDD---LHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTE-FSPDTHCAVDKLLSAICQELSSRYR....................... 140
13 -53.500d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]}  ali model 3D-neighbors follow..  20  1..................MNSEEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPF-DDLPENARFKTHGTRILRQVDEGVKALSGDKKFDDVWKKLAQTHH-EKKVERRSYNELKDIIIEVVCSCVK--LNEKQVHAYHKFFDRAYDIAFAEMAKM..................... 150
14 -53.400d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  22  2.........IIDQGPLPTLTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKFST--KKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTVFKVDSIWFKELSSIFVSTIDGGA----------EFEKLFSIICILLRSAY........................ 146
15 -52.900d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  15  1.................SLSAAQKDNVKSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHK-ARGISAGQLEAAFKVLAGFMKSYGGD------EGAWTAVAGALMGMIRPDM........................ 142
16 -52.600d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]}  ali model 3D-neighbors follow..  24  1.....................ADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKFAGIAQ-ADIAGNAAVSAHGATVLKKLGELLKAKGS---HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAG--LDAGGQTALRNVMGIIIADLEANYKELGFS.................. 145
17 -52.600d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}  ali model 3D-neighbors follow..  21  1.................GLSAAQRQVVASTWKDIADNGAGVGKECLSKFISAHPEMAAVFGFSG--------ASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGNKHIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYGDISGALISGLQS...................... 147
18 -52.300d3ozua1 a.1.1.0 (A:1-150) automated matches {Ralstonia eutropha [TaxId: 381666]}  ali model 3D-neighbors follow..  20  2..................LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAHPELKNVFNM-----------AHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKNIANKHA-SLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESELYERSA................ 145
19 -52.200d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  19  5..................CSEEDHRIVQKQWDILWRDTEGFGRLLLTKLAKDIPEVNDLFKRVD-----IEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLD----DYDALAWKSCLKGILTKISSRL........................ 149
20 -52.000d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  26  1..................MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFP-FRDVPL-EELSGNARFRAHAGRIIRVFDESIQVLGDLEKLDEIWTKIAVSHI-PRTVSKESYNQLKGVILDVLTA--ASSLDESQAATWAKLVDHVYAIIFKAIDDDGNAK................. 153
21 -52.000d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  19  1...............SSCCSSEDRANVMHNWDAASDRRVALAQAVFASLFSRDAAAQGLFSGVSA-----DNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQLAHLSAQHQARAGVAAAHFDVMAEAFAEVMPQV----SSCFSSDSWNRCFARIANGISAGL........................ 147
22 -51.500d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}  ali model 3D-neighbors follow..  21  1................VKLSEDQEHYIKGVWKDVDHK--QITAKALERVFVVYPWTTRLFSKLQGLFSAN----DIGVQQHADKVQRALGEAIDDLKK---VEINFQNLSGKHQ-EIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH....................... 141
23 -51.300d2zs0d_ a.1.1.0 (D:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  20  3..................CSRGDAEVVISEWDQVGSSESAIGVAIFDVFFTSSGVSPSMFPGGGDSS-------SAEFLAQVSRVISGADIAINSLTNRATCDSLLSHLNAQHKAISGVTGAAVTHLSEAISSVVAQVLPSAHI----DAWGYCMAYIAAGIGAGL........................ 145
24 -51.000d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  18  1..................MTREEIKMIQKSWLRVIDKMDEAGLLFYRRLFDVEPKVRPLF--------------KIDIEKQGRKLMDVLNWIVLNLQDIDAALDAARELARRHV-KYGVKAEHYPVVGHTLIWTLRKMIGSEWTKQLEQLWTQAYEALAQVMIEEH........................ 133
25 -51.000d3wctd_ a.1.1.0 (D:) automated matches {Lamellibrachia satsuma [TaxId: 104711]}  ali model 3D-neighbors follow..  20  2..................CSEADATIVIKQWNQIAKSRWTMGNEIFSSLFKLKPESEVLFNNVNV-----ANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPS-LIDNFNPD---AWRNCLLPLKNAIAKGL........................ 146
26 -50.700d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  24  1................VHWTQEERDEISKTFQGT--DMKTVVTQALDRMFKVYPWTNRYFQKRT----------DFRSSIHAGIVVGALQDAVKHMDD---VKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAISKQYH....................... 136
27 -50.500d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  1.................DCTSLNRLLVKRQWAEAGTNRELLGNRIWEDLFANMPDARGLFSRVNG-----NDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQHD-SRGIPAAGYPAFVASAISAVRATVGARSFDN--DAWNSCMNQIVSGISG.......................... 142
28 -50.400d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  19  1..................IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLF--------------QNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHK-QYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA.......................... 131
29 -50.200d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  22  1.................ECLVTESLKVKLQWASAAHERVAFGLELWRDIIDDHPEIKAPFSRVRG-----DNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHV-ERNLKPEFFDIFLKHLLHVLGDRLGTHFDFG---AWHDCVDQIIDGIK........................... 140
30 -50.000d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  14  3..................NRQEISDLCVKSLEGRMAQNIENGNAFYRYFFTNFPDLRVYFKGAEKYT-ADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYVRETINRHR-IYKMDPALWMAFFTVFTGYLESVGS--LNDQQKAAWMALGKEFNAESQTHLKNSN.................... 154
31 -49.800d1x46a_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  20  3..............TWVDMEAGDIALVKSSWAQIHDK----EVDILYNFFKSYPASQAKFSAFAGKD-LESLKDTAPFALHATRIVSVINEAIALMENRPALKNVLKQQGINHK-GRGVTAAHFEEFETALEAFLES-HASGYNAGTKKAWDSAFNNMYSVVFPEL........................ 150
32 -49.300d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]}  ali model 3D-neighbors follow..  13  1.................TLTKHEQDILLKELGPHPAHIVETGLGAYHALFTAHPQYISHFSRLEGHTI-ENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHT-SRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAAEKFLKHVFPMMAAEI............................ 147
33 -49.100d2zs0a_ a.1.1.0 (A:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  2..................CNRLEQILVKTQWAQSAENRAAFSRDLFSELFNIQGSSRALFSGVG-----VDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAGQHA-SRNLDASNFAAMGQAVMSVVPTHLD----CFNQHAWGECYERIASGISG.......................... 140
34 -49.000d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]}  ali model 3D-neighbors follow..  12  2..........................FKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKS-DQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQ-HSSLTTGNFEKFFVALVEYMRAS----GQSFDSQSWDRFGKNLVSALSSAGMK...................... 137
35 -48.700d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}  ali model 3D-neighbors follow..  20  1.................GLTAAQIKAIQDHWFNIKGCLQAAADSIFFKYLTAYPGDLAFFHKFSSVPL-YGLRSNPAYKAQTLTVINYLDKVVDALGGN--AGALMKAKVPSHD-AMGITPKHFGQLLKLVGGVFQEEFS--ADPTTVAAWGDAAGVLVAAMK........................... 141
36 -48.500d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  15  1...................TKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM-----------EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHV-NLGVKEEHYPIVGACLLKAIKNLLN--PDEATLKAWEVAYGKIAKFYIDIEKKLYDK.................. 139
37 -47.000d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}  ali model 3D-neighbors follow..  12  1...................ANKTRELCMKSLEHAKNEARQDGIDLYKHMFENYPPLRKYFKSREEYT-AEDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHA-RDHVHMPPE--VWTDFWKLFEEYLKTTLDEPTKQAWHEIGREFAKEINK.......................... 147
38 -46.700d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}  ali model 3D-neighbors follow..  16  1..................LSADQISTVQASFDKVKGD----PVGILYAVFKADPSIMAKFTQFAGKD-LESIKGTAPFETHANRIVGFFSKIIGELPN---IEADVNTFVASHK-PRGVTHDQLNNFRAGFVSYMKAHTD---FAGAEAAWGATLDTFFGMIFSKM........................ 136
39 -35.200d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  1.....................NAADRVMQSYGRCCAS-TGFFDDFYRHFLASSPQIRAKFA-------------TTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHSRA-ALDIRPELYDLWLDALLMAVAEHDRD-CDAETRDAWRDVMGRGIAVIKSYY........................ 129
40 -33.600d2xkia_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]}  ali model 3D-neighbors follow..  12  2............................VNWAAV-------VDDFYQELFKAHPEYQNKFGFKG--VALGSLKGNAAYKTQAGKTVDYINAAIGGSAD-------AAGLASRHK-GRNVGSAEFHNAKACLAKAC----SAHGAPDLGHAIDDILSHL................................ 110
41 -10.900d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  16IQLTNKHADVKKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKNL-DHESSLMDIINDHSSVD-----RLKQTLKRHIQEMFAG-----------DEFIEKRNRIASIHL-RIGLLPKWYMGAFQELLLSMIDIYEASITNKAIKATTKILNLEQQLVLE.......................... 169

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.