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Query: sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILDSKLFEKVKEVCPNVHEKIRAIYADLNQNDFAISKEDMQELLSCTNIIFHCAATVRFDDTLRHAVQLNVTATRQLLLMASQMPKLEAFIHISTAYSNCNLKHIDEVIYPCPVEPKKIIDSLEWLDDAIIDEITPKLIRDWPNIYTYTKALGEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKMGVQVLATFEKIPFERPFRRPNANFTSNSFTSQYWNAVSHRAPAIIYDCYLRLTGRKPRMTKLMNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPKAKQRLKRLRNIHYLFNTALFLIAWRLLIARSQMARNVWFFIVSFCYKFLSYFRASSTLKVLast
1 -22.600d3wj7a_ c.2.1.0 (A:) automated matches {Gluconobacter oxydans [TaxId: 290633]}  ali model 3D-neighbors follow..  21  1.........NDVTLVTGATGFVGSAVARVLEER----HRLRLLVRPTSDRSNIAELN---------------------AELAVGDL------SDPDTLAPALKGVKILFHVAADYRLVPDPETMMKANVEGTRNLMLAALE-AGVEKIIYCSSVAA-----------------------LGLRSDGVPADETTPVSESQVIGIYKLSKYRAEQEVLRREKNLPAIIVNPSTPVGPRD--------KPTPTGQMILDCASGNMPAY---VETGLNIVHVDDVAEGHALAL-----ERGKIGEKYILGGEN---IMLGDLFRMVSQIAGVKPPAVKL------------------QSWLYPVALVSEWLARGFGIEPRVTRETLAM----------SKKLMFFSSDKAK---KELGYAPRPARDAVTDAIAW..................................................................................... 322
2 -21.800d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}  ali model 3D-neighbors follow..  16  3....NSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVAD-------------------GMQSEIGDIR---------DQNKLLEQPEIVFHMAAQPLVRLSYSETYSTNVMGTVYLLEAIRHVGGVKAVVNITS-----------DKCY------DNKEWIWGYRENEAMGGYDP---------YSNSKGCAELVTSSYRNGTAVATVRAG---------------NVIGGVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYW............................................................................................................................................................................................. 282
3 -21.300d2q1sa_ c.2.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  15  5.......LANTNVMVVGGAGFVGSNLVKRLLEL--GVNQVHVVDNLLSA-------------------EKINVPDHPAVRFSETSITDDAL------LASLQDEYDYVFHLATYHGNQSSIHDDHENNTLTTLKLYERLKHFKRLKKVVYSAAGIAEKTFDDAKATEETDIVSLHNND-----------------------SPYSMSKIFGEFYSVYYHKQLPTVRARFQNVYGPGEILGAGWRGTPATVWRNVTPALKGMPLPLENGGVATRDFIFVEDVANGLIACA-----ADGTPGGVYNIASGKETSIA......................................................................................................................................................................................................... 269
4 -21.000d3sxpa_ c.2.1.0 (A:) automated matches {Helicobacter pylori [TaxId: 563041]}  ali model 3D-neighbors follow..  16  1MRYIDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVL--------------DKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKAPNVVGKNESP-------------------------------NVYGFSKLCMDEFVLSHSNDNVQVGLR-----------------NVYGPREFYKEKTASMVLKLFEFGEQLRDFVYIEDVIQANVKAM------KAQKSGVYNVGYSQARSYN......................................................................................................................................................................................................... 262
5 -20.700d1orra1 c.2.1.2 (A:3-339) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}  ali model 3D-neighbors follow..  18  1...........KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL------------------GNFEFVHGDIRNKND-----TRLITKYMPDSCFHLAGQVAMTTSIDNPFEINVGGTLNLLEAVRQYNSNCNIIYSSTN-----------KVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARGLNTVVFRHSSMYGGRQFA-QGWVGWFCQKA-VEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTAL---ANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYC............................................................................................................................................................................................. 285
6 -20.000d4lw8a_ c.2.1.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}  ali model 3D-neighbors follow..  21  3........PSRRAFVTGLTGFTGRYMAERLQAAGYDVWGTVAPGTPRPADPAFAQCT-----------------------LLPVDLL------DAEAMRAAAADADAVVHLAAHVAQDEPSQ-TYAVNIVGTRNLLAALSGLRRPSAVLLASSAYGNSTAGVLDETVAPAPA-----------------------------NDYAVSKLAMEYAAKLWADRLPIVIARP----------------NYTGVPKLVAHYARNAPRISLGNLDVSRDFSDVRDVTAAYLKLI-----EAAPAGETFNVCSERAYSLK......................................................................................................................................................................................................... 244
7 -19.900d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  19  15........QPKVWLITGVAGFIGSNLLETLLKLDQKVVGL-------------DNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIR------NLDDCNNACAGVDYVLHQAALGSVPRSINDPIATNIDGFLNMLIAARD-AKVQSFTYAASSYGDHPGLPKVEDTIGKPLSP-----------------------------YAVTKYVNELYADVFSRGFSTIGLRYFNVFGRRQDPNGAYAAVIP----WTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA---TAGLDARNQVYNIAVGGRTSLN......................................................................................................................................................................................................... 272
8 -19.600d5y1fa1 c.2.1.0 (A:1-308) automated matches {Uncultured archaeon [TaxId: 743092]}  ali model 3D-neighbors follow..  16  2............ILVTGALGQIGTELVLALQEKYGNDKIIASDLKEPENYHCKFEKCDIRDIETYERINNE-------------------------------NKIEIVYHLAASAAGEKNPELCHDVNYNGLENVLKTAKK-YNQKLFCPSSIAGPDVPKEMTPQNVELNPK-----------------------------TVYGITKVKGEELCDTYFKGIDVRGIRYPGLISWKHKPSGGTTDYA---VEMYFDAVESGKYECFVNRNTRLPMMFMDDAIRATLELM.................................................................................................................................................................................................................................. 220
9 -19.400d3slga_ c.2.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  16  1........KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH----------------------ERMHFFEGDITI-----NKEWVEYHVKKCDVILPLVAIATPATYVKQVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPD-----------------------SALTYGPINKPRWIYACSKQLMDRVIWGYGMGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLHIVRGENISLVDGGSQKRAFTYVDDGISALMKII--ENSNGVATGKIYNIGNPN-NNFSVRELANKMLELAAEFP......................................................................................................................................................................................... 275
10 -19.200d1r66a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}  ali model 3D-neighbors follow..  20  2...........RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI-----------LDSLTYAGNRANLAPVDAD--PRLRFVHGDIRDAGL------LARELRGVDAIVHFAAESHVDRSIAGATETNVQGTQTLLQCAVD-AGVGRVVHVSTVYGSIDSGSWTESSPLEPNSP-----------------------------YAASKAGSDLVARAYHRGLDVRITRCCNNYGPYQHPIPLFVTNL-----------DGGTLPLYGDGANVREWVHTDDHCRGIALVL-----AGGRAGEIYHIGGGLELTNR......................................................................................................................................................................................................... 251
11 -19.000d2p4hx_ c.2.1.0 (X:) automated matches {Alfalfa (Medicago sativa) [TaxId: 3879]}  ali model 3D-neighbors follow..  18  2..........GRVCVTGGTGFLGSWIIKSLL---------------ENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL------SNPDSFAAAIEGCVGIFHTASPIDFAEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSA-----------VSFNGKDKDVLDESDWSDVDLLRSVKPFG-----WNYAVSKTLAEKAVLEEQNGIDVVTLILPFIVGRFVCP------KLPDSIEKALVLVLGKKEQI---GVTRFHMVHVDDVARAHIYL................................................................................................................................................................................................................................... 237
12 -19.000d3m2pa1 c.2.1.0 (A:2-293) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  20  1...........KIAVTGGTGFLGQYVVESIKND----NTPIILTRSIGNKAI------------------------NDYEYRVSD-------YTLEDLINQLNDVDAVVHLAATRGSQGKISE-FHDNEILTQNLYDACYE-NNISNIVYASTIYSDETSLPWNEKELPLPD-----------------------------LMYGVSKLACEHIGNIYSRGLCIKNLRFAHLYGFNEKN----------INRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYAL-----KQEKVSGTFNIGSGDALTNY......................................................................................................................................................................................................... 230
13 -19.000d1i24a1 c.2.1.2 (A:3-393) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  10  1...........RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIAS-IHDRISRWKALTGKSIELYVGDIC---------DFEFLAEEPDSVVHFGEQRSAPYSMIDRQHNNVIGTLNVLFAIKEFGEECHLVKLGTMYGTPNI----------DIEEGYITITHNGRTDTLPYPKQAS------SFYHLSKVHDSHNIAFTCKGIRATDLNQGVVYGVKTDET---YDAVFGTA-FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI--ANPAKAGEFRVFNQFTEQFSVNELASLVTKAGS............................................................................................................................................................................................... 310
14 -18.600d2x6ta_ c.2.1.2 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  2............IIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGTK-----------------FVNLVDLNIADYMDKEDF------LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPL-----------------------------NVFGYSKFLFDEYVRQILPNSQIVGFR-----------------NVYGPREGHKGSMASVAKLFEGSENFKRDFVYVGDVADVNLWFL------ENGVSGIFNLGTGRAESFQ......................................................................................................................................................................................................... 244
15 -18.600d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  2..........KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK-----RNVEHWIGHENFE--------------LINHDVVEP-----------LYIEVDQIYHLASPASPPNYMYNTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWG------------------HVNPIGPR------ACYDEGKRVAETMCYAYMKGVEVRVARIFNTFGPRMHMNDGRV-----VSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALM------NSNVSSPVNLGNPEEHTIL......................................................................................................................................................................................................... 245
16 -18.400d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}  ali model 3D-neighbors follow..  17  4..DNAVLPEGSLVLVTGANGFVASHVVEQLLEH-------YKVRGTARSASKLANLQKRWDAKYPGRFE----------TAVVEDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVS---------ALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSVYAASKTEAEKFMDENKPHFTLNAVLPNYTIGTIFDP----ETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRR.......................................................................................................................................................................................................................... 269
17 -17.900d3ko8a_ c.2.1.0 (A:) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  17  2...........RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE------------------------FVNPSAELHVRDLKDYSW--------GAGIKGDVVFHFAANPEVRLSTTEPFNENVVATFNVLEWARQ-TGVRTVVFASSSYGDADVIPTPEEEPYKPISV-----------------------------YGAAKAAGEVMCATYARGVRCLAVRYANVVGPRLRH-------------IMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAW-KKFEEMDAPFLALNVGNVDAVRVL......................................................................................................................................................................................................... 241
18 -17.500d2pzma1 c.2.1.0 (A:1-309) automated matches {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  18  2...........RILITGGAGCLGSNLIEHWLPQ----HEILVIDNFATG-------------------KREVLPPVAGLSVIEGSVTDAGL-----ERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASK-AGVKRLLNFQTAYGRPATVPIPIDSPTAPF-----------------------------TSYGISKTAGEAFLMMS--DVPVVSLR-----------------NVTGPRLAIGPIPTFYKRLKAGQKDTVRDFLDMSDFLAIADLSL-----QEGRPTGVFNVSTGEGHSIK......................................................................................................................................................................................................... 232
19 -17.200d4zrma_ c.2.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  23  2...........NILVTGGAGFIGSHVVDKLIENGYGVIVVDNLSSGKVE------------------------NLNRNALFYEQSIEDEEM-----ERIFSLHRPEYVFHLAAQASVAISVREPAKTNIIGSLVLLEKSIK-YGVKKFIFSSTGGA----------IY----ENVKVFPTPETEIPHPI------------SPYGIAKYSTEMYLEFFARGLKYTVLRYANVYGPRQDP--------YGEAGVVAIFTERMLRHIFGDGEYVRDYVYVDDVVRANLLAM------EKGDNEVFNIGTGRGTTVN......................................................................................................................................................................................................... 245
20 -17.100d4r1sa_ c.2.1.0 (A:) automated matches {Petunia x [TaxId: 4102]}  ali model 3D-neighbors follow..  20  1.......VSGQVVCVTGAGGFIASWLVKILL---------------EKGYTVRGTVRNPDDPKNGHLRELEGAK--ERLTLCKADL------LDYQSLREAINGCDGVFHTASPVTDDP--EQMVEPAVIGTKNVINAAAE-ANVRRVVFTSSIGA---------VYMDPNRDPETVVDETCWSDPDFCKNTK--------NWYCYGKMVAEQAAWEKEKGVDLVVINPVLVQG------PLLQTTVNASVLHILKYLTGSAKTY---ANSVQAYVDVKDVALAHILL................................................................................................................................................................................................................................... 231
21 -17.000d5u4qa1 c.2.1.0 (A:1-334) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  15  2...........KFLVTGAAGFIGFHIAQRLLNEGHNVVGIDNMNDYYDVSLKQARLDRLAY---------------PAFHFQQLDLADREG-----AKLFATEQFDRVIHLAAQAGVRYSLENPADANLMGYLNILEGCRH-TKVKHLVYASSS-----------SVY----------------LNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHGIPTTGLRFFTVYGPWGRP--------MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVL-GSPATSSAPYRVYNIGNSSPVELM......................................................................................................................................................................................................... 269
22 -16.700d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3`, 5`-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  16  14........ENLKISITGAGGFIASHIARRLKHEGHYVIAS-------------------------WKKNEHMTEDMFCDEFHLVDLR------VMENCLKVTEGVDHVFNLAADMGGMGFIQSIMYNNTMISFNMIEAARI-NGIKRFFYASSA-----------CIYPEFKQLETTNVSLKESDAWPAEPQDA---------FGLEKLATEELCKHYNKGIECRIGRFH---------------NIYGPFGTWKGGREKAPAEMWGDGLQTRSFTFIDECVEGVLRLT------KSDFREPVNIGSDEMVSMN......................................................................................................................................................................................................... 266
23 -16.100d2pk3a_ c.2.1.0 (A:) automated matches {Aneurinibacillus thermoaerophilus [TaxId: 143495]}  ali model 3D-neighbors follow..  20  2...........RALITGVAGFVGKYLANHLTEQ-----EVFGTSRNNEAK-------------------------LPNVEMISLDIM------DSQRVKKVISDIDYIFHLAAKSSVKDSWLNTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSYGMILPEEVSEENQLRPM-----------------------------SPYGVSKASVGMLARQYVKGMDIIHTRTFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLS-----QYGKTGDVYNVCSGIGTRIQ......................................................................................................................................................................................................... 245
24 -15.700d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  13........QNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEA---------------------YKNVNQEVVDFE------KLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA-GGCKHFNLLSSKGADKSSNFL----------------------------------------YLQVKGEVEAKVEELK---RYSVFRPGVLLCDRQE..................................................................................................................................................................................................................................................................................... 172
25 -15.500d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2........GIHVALVTGGNKGIGLAIVRDLCRL----GDVVLTARDTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR--------DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTLLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKE-SAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACC---PGWVRTDMAGPKATKSPEEGAETPVYL........................................................................................................................................................................................................................................................ 252
26 -15.400d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}  ali model 3D-neighbors follow..  14  1........SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDF----NGVFTRHGPIDAVVHMCAFLAVGESVRDPLDNNVVGILRLLQAMLL-HKCDKIIFSSSA-----------AIFGNPTMGSVSTNAEPIDINAKKSPE---------SPYGESKLIAERMIRDCAEGIKGICLRYFNACGAHEDGDIG--EHYQGSTHLIPIILGRVMSDIAPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSVFNLGTSRGYSV.......................................................................................................................................................................................................... 314
27 -15.400d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  13  2..........KIALITGITGQDGSYLTEFLLGK-----EVHGLIRRSSNFNTQR---------INHIYIDPHNVNKALMKLHYADLT------DASSLRRWIDVIDEVYNLAAQSHVAVSFEITADVVATGALRLLEAVRDSGRTVKYYQAGSSFGSTPPPQSETTPFHPR------------------------------SPYAASKCAAHWYTVNYREGLFACNGILF---------------NHESPRRGENFVTRKITRLFLGNLQASRDWGFAGDYVEAMWLML------QQEKPDDYVVATEEGHTVE......................................................................................................................................................................................................... 261
28 -15.200d5b6ka1 c.2.1.0 (A:8-349) automated matches {Candida glabrata [TaxId: 284593]}  ali model 3D-neighbors follow..  16  1..........TTVFVSGATGFIAQHVVRQLLDQ-----KVIGSVRSAEKG---------------DHLKNVIFKGGDFNYEIVKDISDP--TAFDHVFEKHGKDIKVVLHTASPFHFNDIEKDLLIPAVNGTKGILESIKKYQTVERVVVTSSFAA-----NTSTVDMFYAKDSSKTITEESWNQDTWESCQSDPI-----RGYCGSKKFAEKAANKDSVKFKLSIINPVYVFGPQNYVEPG-KKILNTSSEVINSLVHL--KKDDPLPEFAGGHIDVRDVAKAHILA................................................................................................................................................................................................................................... 255
29 -14.900d2q46a2 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  13  4..........PTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKE----------------------KIGGEADVFIGDIT------DADSINPAFQGIDALVILTSAVPKMKP-QYPEQVDWIGQKNQIDAAKV-AGVKHIVVVGSMGGTNPDHPLNKL----------------------------------NGNILVWKRKAEQYLAD--SGTPYTIIRAGGLLDK........................................................................................................................................................................................................................................................................................ 179
30 -14.700d1i3ka_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1.........AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPE-----------SLRRVQELTGRSVEFEEMDILDQGA-----QRLFKKYSFMAVIHFAGLKAMGESVQKPLRVNLTGTIQLLEIMKA-HGVKNLVFSSSAYGNPQYLPLDEAHPTGGCT----------------------------NPYGKSKFFIEEMIRDLCQTWNVVLLRYFNPTGAHASGCIG--GIPNNLMPYVSQVAIGRREALNVDGTGVRDYIHVVDLAKGHIAAL--RKLKEQCGCRIYNLGTGTGYSV.......................................................................................................................................................................................................... 276
31 -14.200d2a35a1 c.2.1.2 (A:4-213) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  1........TPKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPAR--KALAEHPRLDNPVGP--LAELLPQLDGSIDTAFCCLG----------------------------TTIKEAGSEEAFRAVDFDLPLAVGKRALE-MGARHYLVVSALGADAKS----------------------------------------SIFYNRVKGELEQALQEQG---QLTIARPSLLFGPREE----------------FRLAEILAAPIARILPGKYHGIEACDLARALWRLA.................................................................................................................................................................................................................................. 190
32 -13.400d2ydya_ c.2.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  1.........NRRVLVTGATGLLGRAVHKEFQQNNWHA----VGCGFRRARPKFEQVNLLDSNAVHHIIHDFQP--------------------------------HVIVHCAAERRPDNQPDAASQLNVDASGNLAKEAAAVG--AFLIYISSDYVDGTNPPYREEDIPAPL-----------------------------NLYGKTKLDGEKAVLENNLG--AAVLRIPILYGEVEKLEESAVTV------MFDKVQFSNKSANMDHWQQRFPTHVKDVA--TVCRQLAEKRMLDPSIKGTFHWSGNEQ--MTKYEMACAIADAF............................................................................................................................................................................................. 242
33 -13.200d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  1........AKQRVFIAGHRGMVGSAIRRQLEQR--GDVELVLRTRDELNLLDSRAVHDFFAS----------------------------------------ERIDQVYLAAAKVG--TYPADFIYQNMMIESNIIHAAHQ-NDVNKLLFLGSSYPKLAKQPMAE------------------------SELLQGTLEPTNEPYAIAKIAGIKLCESYNRGRDYRSVMPT---------------NLYGPHDNFHPSNSHVIPVVWGSGTPMREFLHVDDMAAASIHVM-VWLENTQPMLSHINVGTGVDCTIR......................................................................................................................................................................................................... 253
34 -11.900d4bkpa1 c.2.1.0 (A:8-320) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  2...........RILVTGGSGLVGKAIQK-VVADGAGLPGEDWVFVSSKDADLTDTTRALFEK----------------------------------------VQPTHVIHLAAMVG--KYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTFPDKTTYPIDE------------------------TMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQGCTFTAVIPTNV---------GPHDNFNIEDGHVLPG-SGSALTVWGTGNPRRQFIYSLDLAQLFIWVL---REYNEVEPIILSVGEEDEVSIK......................................................................................................................................................................................................... 246
35 -11.700d4wpga1 c.2.1.0 (A:1-283) automated matches {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  21  2............ILITGSNGQLGTELRYLLDER-----DYVAVDVAEMDITNEDKVEAVFAQ----------------------------------------VKPTLVYHCAAYTAVDEGKALNEAINVTGSENIAKACGKYG--ATLVYISTDYVFDGNKPVGQEW----------------VETDHPDPK---------TEYGRTKRLGELAVERYAEHF--YIIRTA------------WVFGNYG---------KNFVFTMEQLAENHSRLTVVNDQHGR-LAEFMCYLTENQKAFGYYHLSNDAKEDTTWYDFAKEILK............................................................................................................................................................................................... 229
36 -11.500d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  4.......LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR-----------QLKEELGAQQPDL--KVVLAAADLG------TEAGVQRLLSAVLLLINNAATLG-LAEVNNYWALNLTSMLCLTSFQDSPGLSKTVVNISSLCALQPYKGW--------------------------------------GLYCAGKAARDMLLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQSGAHV.................................................................................................................................................................................................................................... 255
37 -11.000d5wqpa1 c.2.1.0 (A:1-229) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  14  2..........HNVLIVGASRGIGLGLADAFLQR-----QVFAVARRPQGS---------------PGLQALAERAGERLQAVTGDLNQHD-CAERIGEMLGERRIDRLIVNAGIYG--EQTAQLFLTNAIAPLRLARLSGRVSRGGVVAFMSSQMASLALGLSATMP-----------------------------------LYGASKAALNSLVRSWEGEFE----ELPFSLLLLH---PGWVRTEMGGDSAPLSVEESAAGLV.......................................................................................................................................................................................................................................................... 205
38 -11.000d5uzxa_ c.2.1.0 (A:) automated matches {Burkholderia multivorans [TaxId: 395019]}  ali model 3D-neighbors follow..  15  3..........PTILLVGASRGLGHAMAAEFLKR-----DVVGTVRADRGR---------------TPLHALAEAYPDRLRIETLDITQPE-QIRALAARLSGRVFDILFVNAGTTNPDDDFVDLMITNALSPMRVVELAGLVPRDGLIGIMSSGQGSIADNESGQRE-----------------------------------LYRGSKAALNQFMRSFAARHA----QTPLAMVLIA---PGWVRTELGGPDARLSIDESVPGVV.......................................................................................................................................................................................................................................................... 207
39 -10.500d5ldga_ c.2.1.0 (A:) automated matches {Mentha piperita [TaxId: 34256]}  ali model 3D-neighbors follow..  13  1.........QRYALVTGANKGIGFEICRQLAEK-----IVILTSRNKRGLEARQKLLK-LDVTDLASVAAVAVFIKSKFGKL--DILVNNAGVSGVEMVGDVSVFNEYIEAGEMIEKFEGAKDCVVTNYYGPKRLTQALIPLLQLSPIVNVSSSFGSLLLLWNEWAKGVLGDEDRLTEERVDEVVEVFLKDIKEGKLEE--AAERVSKAALNAYTKIAAKKYPSFRINAI----------PGYAKTDITFHAGPLSVAEAAQVPVKL........................................................................................................................................................................................................................................................ 288
40 -10.500d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  3...........RAGIIGATGYTGLELV-RLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSI----------------------------LSEFDPEKVSKNCDVLFTAGASYDLVRELKGVKIIDLGADFRFDD--------------PGVY---------REWYGKELSGYENIKRVYGLPELHREEIKNAQVVGNPGXLVKGASGQAVQNMNIM----FGLDETKGLEFTPIYP.................................................................................................................................................................................................................................................................................... 177
41 -10.500d3guya1 c.2.1.0 (A:2-220) automated matches {Vibrio parahaemolyticus [TaxId: 419109]}  ali model 3D-neighbors follow..  17  1............IVITGASSGLGAELAKLYDAE----KATYLTGRSE------------------SKLSTVTNCLSNNVGYRARDLASHQ----EQLFEQLDSIPSTVVHSAGSGYFGEQIQTLIENNLSSAINVLRVKRYKDQPVNVVMIMS--------------------------------------TAAQQPKAQESTYCAVKGLIESVRLEKGKPMKIIAVYPGGMATEFWE..................................................................................................................................................................................................................................................................................... 179
42 -10.400d1snya1 c.2.1.2 (A:2-248) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15  2..........NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV------TKDQGLNVLFNNAGIAPKSARITAVRQELLDTLQTNTVVAKACLPLLKKAAKANAIINMSSILGSIQGNTDGGMY-----------------------------------AYRTSKSALNAATKSLSVDLY----PQRIMCVSLH---PGWVKTDMGGSSAPLDVPTSTGQIV.......................................................................................................................................................................................................................................................... 223
43 -10.300d3kzva_ c.2.1.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  14  1.........GKVILVTGVSRGIGKSIVDVLFSL----KDTVVYGVARSEAPLKKLKEKY-----------------DRFFYVVGDIT------EDSVLKQLVNKIDSLVANAGVLE-VNAWKKLYDINFFSIVSLVGLPELKKTNGNVVFVSSDACNMYFSSW--------------------------------------GAYGSSKAALNHFLANEERQVKAIAVAPGIVDTDMQVNI................................................................................................................................................................................................................................................................................... 188
44 -10.300d1kc0a_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica}  ali model 3D-neighbors follow..  21  2...........NILLFGKTGQVGWELQRSL----APVGNLIALDVHSK----EFCGDFSNPKGVAETVRKLRP--------------------------------DVIVNAAAHTAVDSEPELAQLLNATSVEAIAKAANETG--AWVVHYSTDYV---------------------------FPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPK---LIFRTS------------WVYAGKGNNFAKTMLRLAVINDQYGAPTGAELLADC-------TAHAIRVALNKPEVAGLYHLVAGGT--TTWHDYAALVFDEARK........................................................................................................................................................................................... 236
45 -10.100d3sc6a_ c.2.1.0 (A:) automated matches {Bacillus anthracis [TaxId: 198094]}  ali model 3D-neighbors follow..  22  2..........ERVIITGANGQLGKQLQEELNPE-----DIYPFDKKLLDITNISQVQQVVQE----------------------------------------IRPHIIIHCAAYTKVDKERDLAYVINAIGARNVAVASQLVG--AKLVYISTDYV---------------------------FQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKY--FIVRTS------------WLYGKYGNNFV-----KTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGS--CSWFEFAKKIFSYA............................................................................................................................................................................................. 227
46 -10.100d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}  ali model 3D-neighbors follow..  16  1.ATDDEWKPTGTVLVTGGTGGVGGQIARWLARR----GAPHLLLVSRSGPDADGAGE----------LVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLD-GERIERASRAKVLGARNLHELTREL-DLTAFVLFSSF--------------------------------------ASAFGAPGLGGYAPGNAYLDGLAQRRSDGLPAT----AVAWGTWAG--SGMAEG-HGVIEMPPETACRALQNALDRAEVCPIVIDVRW........................................................................................................................................................................................................................................... 235
47 -10.100d3rkua1 c.2.1.0 (A:1-267) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  5.RKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL------EKLEELKK-----TIDQEFPN--AKVHVAQLDITAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVQDVFDTNVTALINITQAVLPIFQAKNSGDIVN-----------------------------------LGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIA-------PGLVE-----TEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATS.................................................................................................................................................................................................................................. 241
48 -9.920d1sbya_ c.2.1.2 (A:) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}  ali model 3D-neighbors follow..  13  3.......LTNKNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTALAELKAINPKV---------------NITFHTYDVTVPVAESKKLLKKIFDQTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRIIANICS-----------------------VTGFNAIHQVPVYSASKAAVVS-------FTNSLAKLAPIT---GVTAYSINPGITRTPLVHTF................................................................................................................................................................................................................................................................................... 192
49 -9.780d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  14  1.......MSPGSVVVTGANRGIGLGLVQQLVKD-KNIRHIIATARDVEKATELKSIKD------------------SRVHVLPLTVTCDK--VGSDGLSLLINNAGVLLSYGTNTEPNAVIAEQLDVNTTSTQKLLPLLKNAASKEAVITISSGLGSITDNTSGSAQFPVL-------------------------------AYRMSKAAINMFGRTLAVDLK----DDNVLVVNFC---PGWVQTNLGGKNAALTVEQSTAELI.......................................................................................................................................................................................................................................................... 226
50 -9.740d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1........ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGR------------LWEAARALACPPGSLETLQLDVRDSK-SVAAARERVTEGRVDVLVCNAGLGLLEDAVASVLDVNVVGTVRMLQAFMKRRGSGRVLVTGS--------------------------------------VGGLMGLPFNDVYCASKGLCESLAVLLLPGVHLSLIECGPVHTAFME..................................................................................................................................................................................................................................................................................... 194
51 -9.640d1xg5a1 c.2.1.2 (A:2-256) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  8.......WRDRLALVTGASGGIGAAVARALVQ-----QGLKVVGCARTVGNIEELAAEC-----------KSAGYPGTLIPYRCDLSEEDILSMFSAIRSQHSGVDICINNAGLARPDSGWKDMFNVNVLALSICTRMKERNVDDGHIININSMSGHRVLPLSVTHFYSAT------------------------------AVTALTEGLRQEL-REAQTHIRATCISPGVVETQFAFKL................................................................................................................................................................................................................................................................................... 208
52 -9.640d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  4..........KKIAIFGATGQTGLTTLAQAVQA----YEVTVLVRDSSRLPSEGP---------------------RPAHVVVGDV------LQAADVDKTVAGQDAVIVLLGT----RNDLSPTTVMSEGARNIVAAMKA-HGVDKVVACTSAFLLWDPTKVPPRL----------------------------------QAVTDDHIRMHKVLRE--SGLKYVAVMPPHIGDQ........................................................................................................................................................................................................................................................................................ 157
53 -9.500d5bt9a1 c.2.1.0 (A:9-254) automated matches {Brucella ovis [TaxId: 1293916]}  ali model 3D-neighbors follow..  10  1......MVANCPVLVTGGARRIGKAIVEDLASHGFPV-----AIHCNRSLDEGEAIANRINDS-------------GNACVVQADLEGDVRGLVKQASDRI-GPIRLLVNNASLFQEDALWDRHFAVHLKTPVILAEMRKALPEDQDGLVVNIIDQRVWKLNPQFFSY--TLSKTALWNATRTLAQALAPRIRVNAIA--PGPTLPSERQRPEDFERQVSKLPLQ-FGRTVRYFWENRSITGQMIALDG.......................................................................................................................................................................................................................................................................... 235
54 -9.370d3e9na_ c.2.1.0 (A:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  17  1..........KIAVVTGATGGMGIEIVKDLSRD----HIVYALGRNP------EHLAALAEIE--------------GVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTAEWHAHLDLNVIVPAELSRLPALRAASGCVIYINS--------------------------------------GAGNGPHPGNTIYAASKGLADAFRKEEANGIRVSTVSPGPTNTPMLQGL................................................................................................................................................................................................................................................................................... 182
55 -9.230d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}  ali model 3D-neighbors follow..  13  2........QKKTIAVVGATGRQGASLIRVAAAV-----HVRAQVHSLKGLIAEE-------------------QAIPNVTLFQGPLLNN-----VPLMDTLFEGAHLAFINTTSQAGDE---------IAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWA-------------------------------------PKFTVENYVRQLG--LPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFE--------HAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRI----ALTFETLSPVQVCAAFSRAL............................................................................................................................................................................................. 234
56 -9.220d3un1a1 c.2.1.0 (A:0-236) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  11  3.......NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRI-------------------DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEQGSGHIVSITTSLVDQPMVGMPSALA--SLTKGGLNAVTRSLAMEFVNAVSPGVIK--------TPMHPAETHSTLAGLHPVGMGEIRDVVDAV------YLEHAGFITGEILHVDGGQN............................................................................................................................................................................................................................................................. 233
57 -9.010d3l6ea1 c.2.1.0 (A:4-227) automated matches {Aeromonas hydrophila [TaxId: 380703]}  ali model 3D-neighbors follow..  15  2...........HIIVTGAGSGLGRALTIGLVER----HQVSMMGRRY------------------QRLQQQELLLGNAVIGIVADLAHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGEQIRRVMESNLVSTILVAQVRLIGERGGVLANVLSSAAQVGKANE--------------------------------------SLYCASKGFLESLRAELKDPLRLVNLYPSGIRSEFWDNTD.................................................................................................................................................................................................................................................................................. 187

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.