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Query: sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1, from H.sapiens

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYMLEKCLGPAFTPATRAAWSQLYGAVVQAMSRGWDGELast
1 -67.700d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  92  1..RPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAMSRGWDG. 148
2 -61.800d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]}  ali model 3D-neighbors follow..  21  2FTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKD---SPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKRESNLKRLGAIHFKNGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMK.. 150
3 -60.600d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  32  1MTREEIKMIQKSWLRVIDKMDEAGLLFYRRLFDVEPKVRPLFK---------------IDIEKQGRKLMDVLNWIVLNLQDIDAALDAARELARRHVKYGVKAEHYPVVGHTLIWTLRKMIGSEWTKQLEQLWTQAYEALAQVMIEEH... 133
4 -60.100d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}  ali model 3D-neighbors follow..  20  2LSAAQRQVVASTWKDIADNGAGVGKECLSKFISAHPEMAAVFGFSGA---------SDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGYGIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYGDISGALISGLQS. 147
5 -59.800d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  16  3LTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGG-LTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMED--HNHMVGGAKDAWEVFVGFICKTLGDYMKE. 149
6 -59.700d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  35  1IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQ---------------NPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA..... 131
7 -59.300d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  3LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQ-FKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHAKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKE. 152
8 -59.000d3ozua1 a.1.1.0 (A:1-150) automated matches {Ralstonia eutropha [TaxId: 381666]}  ali model 3D-neighbors follow..  23  2LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAHPELKNVFN------------MAHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKNIANKHASLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESE. 139
9 -58.800d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}  ali model 3D-neighbors follow..  20  2LSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADF--KGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHVGFGVGSAQFENVRSMFPGFVASVAA--PPAGADAAWTKLFGLIIDALKAAGA.. 146
10 -58.600d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}  ali model 3D-neighbors follow..  23  12LTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQM--AGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDS-DILPELLATLARTHDLNKVGADHYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQAVLLVKHG.. 157
11 -57.600d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  20  1MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFPF---RDVPLEELSGNARFRAHAGRIIRVFDESIQVLGDLEKLDEIWTKIAVSHIPRTVSKESYNQLKGVILDVLTA--ASSLDESQAATWAKLVDHVYAIIFKAIDDD 149
12 -57.300d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  18  1.TKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM------------EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLLKAIKNLLN--PDEATLKAWEVAYGKIAKFYIDIEKK. 135
13 -56.500d1x3ka_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  14  5LSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFET---KGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSGPHVARPITHGSYNDLRGVIYDSMH------LDSTHGAAWNKMMDNFFYVFYECLDGR 147
14 -56.200d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  17  2LSAAQKDNVKSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLF-SGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLAGFMKSYGGD------EGAWTAVAGALMGMIRPDM... 142
15 -56.200d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]}  ali model 3D-neighbors follow..  15  1MNSEEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWF--KEIPFDDLPENARFKTHGTRILRQVDEGVKALSGDKKFDDVWKKLAQTHHEKKVERRSYNELKDIIIEVVCSCVK--LNEKQVHAYHKFFDRAYDIAFAEMAK. 149
16 -56.100d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}  ali model 3D-neighbors follow..  15  10LTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFK----RLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIKKVLA---SKNFGDKYANAWAKLVAVVQAAL....... 146
17 -55.700d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  2LSPADKTNVKAAWGKVGAHAGEYGAEAYERMFLSFPTTKTYFPHF-------DLSHGSAQVKGQGKKVADALTNAVAHVDDMPNALSALSDLHAHK--LRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR.. 141
18 -55.300d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}  ali model 3D-neighbors follow..  15  3LSEGEWQLVLHVWAKVEADVAGHGQDIYIRLFKSHPETLEKFDR-FKHLKTEAEMKASEDLKKQGVRVLTALGAILKKKGH---HEAELKPLAQSHAKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKE. 149
19 -55.200d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  2CTSLNRLLVKRQWAEAGTNRELLGNRIWEDLFANMPDARGLFSRVN------GNDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQHDSRGIPAAGYPAFVASAISAVRATVGARSFDN--DAWNSCMNQIVSGISG..... 142
20 -54.300d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}  ali model 3D-neighbors follow..  21  3LSEDQEHYIKGVWKDVDHK--QITAKALERVFVVYPWTTRLFSKLQGLFSA-----NDIGVQQHADKVQRALGEAIDDLKK---VEINFQNLSGKHQEIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH.. 141
21 -54.200d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  20  2CLVTESLKVKLQWASAAHERVAFGLELWRDIIDDHPEIKAPFSRV------RGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFG---AWHDCVDQIIDGIK...... 140
22 -53.200d2zs0a_ a.1.1.0 (A:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  19  2CNRLEQILVKTQWAQSAENRAAFSRDLFSELFNIQGSSRALFSGVG------VDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAGQHASRNLDASNFAAMGQAVMSVVPTHLD----CFNQHAWGECYERIASGISG..... 140
23 -52.900d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  25  2FTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYK-------DYSAAGAKVQVHGGKVIRAVVKAAEHVDD---LHSHLETLALTHGKLLVDPQNFPMLSECIIVTLATHLTE-FSPDTHCAVDKLLSAICQELSSRYR.. 140
24 -52.600d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}  ali model 3D-neighbors follow..  18  3WTDKERSIISDIFSHMDYD--DIGPKALSRCLVVYPWTQRYFS-GFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMDNIADAYTDL--STLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVSALGKQYH.. 146
25 -52.300d1x46a_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  19  7MEAGDIALVKSSWAQIHDK----EVDILYNFFKSYPASQAKFSAF--AGKDLESLKDTAPFALHATRIVSVINEAIAVAENRPALKNVLKQQGINHKGRGVTAAHFEEFETALEAFLES-HASGYNAGTKKAWDSAFNNMYSVVFPEL... 150
26 -52.200d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]}  ali model 3D-neighbors follow..  12  2LTKHEQDILLKELGPHPAHIVETGLGAYHALFTAHPQYISHFSRL--EGHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHTSRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAVEKFLKHVFPMMAAEI....... 147
27 -51.300d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  14  3NRQEISDLCVKSLEGRMAQNIENGNAFYRYFFTNFPDLRVYFKGA--EKYTADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYVRETINRHRIYKMDPALWMAFFTVFTGYLESVGS--LNDQQKAAWMALGKEFNAESQTHLKN. 152
28 -50.900d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}  ali model 3D-neighbors follow..  17  1.ANKTRELCMKSLEHAKNEARQDGIDLYKHMFENYPPLRKYFKSR--EEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHARDHVHMPPE--VWTDFWKLFEEYLKTTLDEPTKQAWHEIGREFAKEINK..... 147
29 -50.700d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}  ali model 3D-neighbors follow..  17  2LTAAQIKAIQDHWFNIKGCLQAAADSIFFKYLTAYPGDLAFFHKF--SSVPLYGLRSNPAYKAQTLTVINYLDKVVDALGGN--AGALMKAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFS--ADPTTVAAWGDAAGVLVAAM....... 140
30 -50.600d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  20  5CSEEDHRIVQKQWDILWRDTEGFGRLLLTKLAKDIPEVNDLFKRV------DIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVEGVQKAHFKKFGEILATGLPQVLD----DYDALAWKSCLKGILTKISSRL... 149
31 -50.400d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  4CSSEDRANVMHNWDAASDRRVALAQAVFASLFSRDAAAQGLFSGVS------ADNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQLAHLSAQHQARGVAAAHFDVMAEAFAEVMPQV----SSCFSSDSWNRCFARIANGISAGL... 147
32 -50.300d2zs0d_ a.1.1.0 (D:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  20  3CSRGDAEVVISEWDQVGSSESAIGVAIFDVFFTSSGVSPSMFPGG--------GDSSSAEFLAQVSRVISGADIAINSLTNRATCDSLLSHLNAQHKAIGVTGAAVTHLSEAISSVVAQVLPSAHI----DAWGYCMAYIAAGIGAGL... 145
33 -50.300d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]}  ali model 3D-neighbors follow..  15  2........FKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNY--VGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKFFVALVEYMR----ASGQSFDSQSWDRFGKNLVSALSSAGMK. 137
34 -50.200d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  10  11LTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKF---STKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKVFKVDSIWFKELSSIFVSTIDGGAEEKLFSIICILLRSAY.............. 146
35 -50.200d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  20  3WTQEERDEISKTFQGT--DMKTVVTQALDRMFKVYPWTNRYFQK-----------RTDFRSSIHAGIVVGALQDAVKHMDD---VKTLFKDLSKKHADLHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAISKQYH.. 136
36 -49.700d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]}  ali model 3D-neighbors follow..  14  1...ADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKF--AGIAQADIAGNAAVSAHGATVLKKLGELLKAKGS---HAAILKPLANSHAKHKIPINNFKLISEVLVKVMQEKAG--LDAGGQTALRNVMGIIIADLEANYKE. 141
37 -49.100d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}  ali model 3D-neighbors follow..  11  1LSADQISTVQASFDKVKGD----PVGILYAVFKADPSIMAKFTQF--AGKDLESIKGTAPFETHANRIVGFFSKIIGELPN---IEADVNTFVASHKPRGVTHDQLNNFRAGFVSYMKAHTD---FAGAEAAWGATLDTFFGMIFSKM... 136
38 -48.600d3wctd_ a.1.1.0 (D:) automated matches {Lamellibrachia satsuma [TaxId: 104711]}  ali model 3D-neighbors follow..  24  2CSEADATIVIKQWNQIAKSRWTMGNEIFSSLFKLKPESEVLFNNV------NVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARGLKAVYFDAMGKVLMTVLPS-LIDNFNPD---AWRNCLLPLKNAIAKGL... 146
39 -43.100d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  1...NAADRVMQSYGRCCAS-TGFFDDFYRHFLASSPQIRAKFA--------------TTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHSRAALDIRPELYDLWLDALLMAVAEHDRD-CDAETRDAWRDVMGRGIAVIKSYY... 129
40 -38.400d2xkia_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]}  ali model 3D-neighbors follow..  18  2..........VNWAAV-------VDDFYQELFKAHPEYQNKFGF---KGVALGSLKGNAAYKTQAGKTVDYINAAIGGSAD-------AAGLASRHKGRNVGSAEFHNAKACLAKA----CSAHGAPDLGHAIDDILSHL........... 110
41 -12.800d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  34LGDAELYVLEQLQPLIQENIVNIVDAFYKNLDH-ESSLMDIIN-------------DHSSVDRLKQTLKRHIQEMFAGVIDDEFIEKRN-RIASIHLRIGLLPKWYMGAFQELLLSMIDIYEASITNKAIKATTKILNLEQQLVLE..... 169
42 -9.830d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}  ali model 3D-neighbors follow..  10................AKTFDAIVSRFYAQV-AEDEVLRRVYP--------------EDDLAGAEERLRMFLEQYWGGPRTYSE-----PRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVN..... 123
43 -9.520d2ig3a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  14  8................QESIAKLMEIFYEKVRK-DKDLGPIFNNAIGT--------SDEEWKEHKAKIGNFWAGMLLGEGDYN------QPLKKHLDLPPFPQEFF----EIWLKLFEESLNIVYNEEMKNVILQRAQMIASHFQNMLYKY 124

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24