current user: public
If you have questions about the server, please let us know.

Query: sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1, from H.sapiens

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .
# Score Template Links and tools%idFirst GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRIALRYYNQSEAGSHTWQTMYGCDLGPDGRLLRGHNQLAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGKGGSYSQAASSDSAQGSDVSLTALast
1 -9.290[R] KOG3515 Predicted transmembrane protein of the immunoglobulin family of cell adhesion molecules  ali follow..  13  261.................................................................................................................................................................................SLDVLYRPKFVPPPSSTEGESLQVSLQTRA--PTPVTYKWTKDGTTIPQDLNFTRLHRDDAGIYSCSASIVVNPGEDAMLSCTVEGKPLTEE-HVKWERVGYDMTVKTSTTFANGTSYLHI-----------KDAKREDVGNFRCVADNRVDNPTNRDILL 449
2 -8.630[C] COG3794 Plastocyanin  ali follow..  22  34................................................................................................................................................................................................GMVSNGFVPQEPVEGEDMATHTVTWANTGSRNHTVTAYGSGLPEGDNVEGGGNEVTLTVPGEYYYFCIP-HEGMRGKLVVD................................................................. 148
3 -6.980[K] COG5641 GATA Zn-finger-containing transcription factor  ali follow..  14  112....................................................................................................................................................................................QTMDANCNNNVSNDANVPVCKNCLTS---P------WRRDEH--------GAMLCNACGLFLK-------------------H-GKPRPISLKTD-------------------------------IKSRNRKSNTNHAHNLDNFRNQTLIAELK... 203
4 -6.850[P] COG4454 Uncharacterized copper-binding protein  ali follow..  17  37................................................................................................................................................................................................DKSKVTQTIQVTMKEFTPAKFEF---KKGKTVRFAVKNVGELDHEEMEHDNPNAISLAPGESGEFACLKPHAGMRGDLKVS................................................................. 156
5 -6.340[P] COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport  ali follow..  14  84........................................................................................................................................................................................PYLTIAYELKNTDTGAIK-ADDGPYGANIAMEKDKKG-------------GFGVGNYE--LTFYISNPEKQGFGRHVDEETWFEPFKVDYK............................................................... 171
6 -6.060[O] KOG3591 Alpha crystallins  ali follow..  12  80............................................................................................................................................................................................ALLPAVGKDGFQVCMDVSQFKPNELTVKVVDNGKHEEREDGHGMIQRHFVRKYTLPKGF-----DPNEVVSTVSSDGV---LTLKAPPPPSKEQAKSER--------IVQIQQTGPAHLSVKAPAPEAGDGKAENGSGEKMETSK..... 213
7 -5.920[S] KOG4798 Uncharacterized conserved protein  ali follow..  9  1........................MGLMNPISFLLVTGSKISLEGISESKTSVSWEDNGFDGKPSSIRTKMNKKKCRPRVKLLLNPDGATAASNTFKATQRSMEQAGMCLLIFKLYATPRKD-PMKLDELSLYSVPKGEFEYVEEWRTQFEESISQLQHYCHQITFCTDCLDVSTKEVIFGRNQVVQGYITGQSRVVHVNLKNVLLHPFIRPVNVAW--------------PVFPNGINFINKHDERCIFFSSSKQFPC--EFGPITKVLLNKFRTNHPQES........................................................ 252
8 -5.860[K] KOG4343 bZIP transcription factor ATF6  ali follow..  11  471.....................................................................................................................INTTESLRLNHELRGWVHRHEVERTKSRRMTNNQQKTRILQGVVEQGSNSQLMAVQYTETTSSISRNSGSELQVYYASPRSEAIRRRGDTFY-----VSFRRD------------LLPTHNKTTRPKMSIVLPAININQIDCQVMDTRI-----LHIKSSSVPPY-------------------------LRDQQRNQTNTFFGSPPAATEATHVVSTIPE 667
9 -5.760[I] KOG2369 Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase  ali follow..  9  118..................IEMLVGCGYKKGTTLF-YD----------------------F-RQSNRIDLLILGLKKKLETAYKRSGHSMGGLMVSCFMYLHPELVECPSIYEMMANPKWKK---EIRVWRKKSENDVDTSVELESFGLIESIDLFNDALKNNELSYGGNKIALPFNFAILDWAAKTREILNKAQLPDGVSFYNIYGVSLNTPFDVCYGTETSPIDDLSEICQTMPDGDGTVPAESAAAAQFKAVASVGVSGSHRGLLRD..................................................................... 361
10 -5.660[C] COG3043 Nitrate reductase cytochrome c-type subunit  ali follow..  14  75........................................................................................................................................................................................PHSVEGYQVTTNTNRCLQCH----------------GVESYRTTGAPRISPTHFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK........................................................ 156
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.