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Query: sp|Q6PL24|TMED8_HUMAN Protein TMED8 OS=Homo sapiens GN=TMED8 PE=1 SV=1, from H.sapiens

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDLQAAEGPGSWSPTARPGSAGGVGDCQGVEGSQAAASENEDLENKDTSLLASATDPEPCSSPHRPQMVSPVSKDATEDLRKATGPLEAQALVKQDLLPADQAQVLNEMAKYQVPQRSGDIVMIQSEHTGAIDVLSADLESADLLGDHRKVSPPLMAPPCIWTFAKVKEFKSKLGKEKNSRLVVKRGEVVTIRVPTHPEGKRVCWEFATDDYDIGFGVYFDWTPVTSTDITVQVSDSSDDEDEEEEEEEEIEEPVPAGDVERGSRSSLRGRYGEVMPVYRRDSHRDVQAGSHDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYTSLast
1 -11.600[U] KOG3287 Membrane trafficking protein, emp24/gp25L/p24 family  ali follow..  14  15......................................................................................................................................................................................TPFILCGEYDFTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGGDLNINFMILH----------------------------------------GANILKQDQLKVDGSIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFD 119
2 -8.210[U] KOG1692 Putative cargo transport protein EMP24 (p24 protein family)  ali follow..  22  27.....................................................................................................................................................................................SLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD-HPGLDFTVTSPAGNIVQTLKGTSGDK--------------------------------------------------EFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHIP 126
3 -7.800[U] KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins  ali follow..  13  21.....................................................................................................................................................................................TFELPDNANQCFYEDL-KKDVDTVFEFQVGHYDVDLII-----EDPNGKVLYKDTKKQYDS-------------------------------------------------NFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGD 113
4 -7.680[S] COG5513 Predicted secreted protein  ali follow..  9  178...............................................................................................................................................................................EAGNGTTISLEKGETFYLRLE-ENPTTGYSWELNLSQGLS---LVSDDYYPPEA-----------------------------------------------------EESEQPLLGAIKADSEGKQQATAIYKRSW--EDKFILNVEVA. 280
5 -6.210[C] COG3241 Azurin  ali follow..  9  55................................................................................................................................................................................AAGNCAATVESNDNMQFDIQVSKACKEFTITLKHTGT-------QPKTSMGHNIVIGKTEDMDGIFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLT--------------DPAKLADGEYKFAFPGHGALMNGK-----VTLVD 183
6 -5.900[R] KOG2502 Tub family proteins  ali follow..  5  328.............................................................................................................................................................................................................WLQPLRCWCLNFK--------GRVTVASVKNFQLMSAATVQPGSGSDGGALATRPSLSPQQPEQSNHDKIILHFGKVGKD--------------MFTMDYRYPLSAFQA----FAISLST 421
7 -5.880[S] COG4929 Uncharacterized membrane-anchored protein  ali follow..  7  26....................................................................................................................................................................................KQHLLAKGDIIILELAPVDPRSLMQGDYMA----LSYALVAPFNEQFNAEQEKCREEPLLLCPESKRRLIVELDDRQRATAARIDQGEPLADNQHYFQEGHAEDYVNARYGEFRVAKDGSALLLLDADLQRIENK.......... 176
8 -5.550[T] KOG3858 Ephrin, ligand for Eph receptor tyrosine kinase  ali follow..  10  267...............................................................................................................................................................................................................................................KRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPSDIIIPLRTTENHYEKVSGDY-----GVYIV---QEMPPQSPANIYYKV.... 346
9 -5.470[R] COG3943 Virulence protein  ali follow..  15  2.....................................................................................................................................................................................SIILYTANDGTAQFALQEFGGQL-WLTQADMAEL-YQT-------TKQNISKHIKTILAEQELEEKATVNFQLTVQNENGRKVNRKIAHYSLPMIIAVYRVRSARGIQFRQWATERLDEYLT---KGFA-IDDERL........ 125
10 -5.230[N] COG5492 Bacterial surface proteins containing Ig-like domains  ali follow..  12  173....................................................................................................................................................................................TNATVKVGATTAVTFTVKPDNVTLRI--ATSDPTTA----------------------------------------------------------------TVTQA----IATVKGVKAGTVKII-DGNFT-------IADITVQA 249
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.