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Query: HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNIYNTLGMTKACLCALAVSLVTTGCSDLLDKEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKENFSTLMASSNTVATNSNLRWYWGNAYTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGGGLast
1 -8.200[R] COG4105 DNA uptake lipoprotein  ali follow..  6VGQSKAPQRSVLLALSLVVPSLFLSACMS-LSKYVDQTEPADVLYNNAGRLDEASKKFDAVDRQHPYSEWARKSMVMGAFADYRKGSYDEAISSAKRYLALYPSTDDAPYA-KEARQTLQTMQDLVTRWPTSEYVDDAKEKILAGKEMQIGRYYLEVVENYSNTRHVEEALARLTESYYAMGLTSEA----QTAAAVLGTNYPDSPWYKDSY..... 261
2 -7.930[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)  ali follow..  12  1.........MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSM--------------MMSGSVSAITRDGRPIVFVERIKNKTSEHIDTESITDTISTKMLNSGKFR-------VDMDRVEAVRDQLNFQNNDELVNFGKMVGAQYMLYGNLSSIVKNAGSDKDVYYKMTMRLMDLQTGL.................. 176
3 -7.850[M] COG3065 Starvation-inducible outer membrane lipoprotein  ali follow..  10  1MTQSKKFRNHKWMYGWLGLGALLLSGCVTIPPAIQGTTATPLQDLNLIRSAPKLFIGQEARFGG------------------------------TVVNVKNEPNRTR-----------LEIASVPLDSGARPILGEPSQGRVIAYVDFLEPVDF-HLVTVVGPIVGVEAGKIGMTPYNFVVIKATGYK............................. 149
4 -7.620[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  2VKKAI-------VTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKG------EKSYYRAKGDALEMLDREGNPIESQFNYTLEQSSLPMTPMTLRGMYFYMADAATFTDCATGKRFMVANNAELERGYLAARGHLLSVEGHFTLEANPDTGAPTK.. 215
5 -7.090[I] COG1562 Phytoene/squalene synthetase  ali follow..  13..........................ALKVLQE------TSRTFYIPPDQLLDAVASAYLCMR-------------AIDEVEDHPDLDAETKARILNQISLNLQSATENSHSEDFIRGLDPYRNLLPEVTLRRVWDATAAMSDRMAFWLDQYTFS-VAGAVGLLLSDLWAWHDGTQTNRSHAQAVNIVRNYKEDKRRGVSFFPQGWELADM...... 214
6 -6.690[K] KOG1657 CCAAT-binding factor, subunit C (HAP5)  ali follow..  18  43.....................................................................................................QQLTQQLQSFWETQFKEIEKTTDFLARIKKIMKADEDVRMISAEAPVVRACEMF----------LTLRSWNHTEENKRRTLQKNDIAAAVTRTFDFLVDIVPREDLRDEVLGGVGA 161
7 -6.470[R] COG3489 Predicted periplasmic lipoprotein  ali follow..  12  1.........MLKRSTLVLVLPLALLGVFPASAAVKASDIIQG--------IDGFVRPAYADLHQHAEALTRAMHTLCKAPSQGELDAARAEFSATVYAWSSAEI-----LYWPDRKSIGLKVQAALADKDPTASDPAQLAGKSVAMQGLGALEFV----LFGD--------GADALAGKDDPYRCAYGAAVAGNIETMAGDVSAAWNKPDGFAAL.. 198
8 -6.240[C] KOG4077 Cytochrome c oxidase, subunit Va/COX6  ali follow..  16  42.................................................................................................SHGSQETDEEFDARWVTYFNKPDIDAWELRK----GINTLVTYDMVPEPKIIDA---LRACRRLNDFASLVRIL---EVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELG...... 146
9 -5.590[D] COG2385 Sporulation protein and related proteins  ali follow..  15.SLPTNLRVLLPWLQLIGKSSFFGLIISLAWTLSAQAMELRVAISKGVSNVGVGSSTPALVKNAGGATIGRLDSLVPANATASGRNINLAG--MQASQITIEPSGDGRIWIGDRWYRGLIRQGNGVSAVNLVDIEEYLYEALKAQAVAARTYAIYQTSK------------DSNRYYDLDTTTATQVYKGMNNEMTYNGKVILAAFHAASGGHTENV 247
10 -5.490[S] KOG2477 Uncharacterized conserved protein  ali follow..  14  1.........MVRPVLDIPVPGLLI--CSGYQSRNDGPVLE----FPNPGRFSLPVNSLFSLV-------------------------------------------SVLQKLWTGYWIHIPALNLSIEQSKSFPSSEQSSSSIAGVAVFF--FFFFRL--------LIISPTGPWTDIVNMFSGIKI............................... 122

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.