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Query: HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKVEVHYFDELLERIRDIRASEKRVYRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEAADDVDELTADVKRLKRLast
1 -44.900[R] COG3943 Virulence protein  ali follow..  41  130...GGDYWKELLNRIRDIRSSEKALYRQVLDLYATSQDYNPKSSESQTFFAAVQNKLHYAASRQTAAELIYSRADSSKDFMGLTTFQGAIPTLNEAKIAKNYLTEDELFRLNRLVSAFFDLAEIKAQEQSPMYMRDWIAELDKFSGLYGQGTLQGAGSISRKQAEQKAEREYRAYEARILSPVEQAYLESVKALEKTAVQ 326
2 -7.350[E] KOG3216 Diamine acetyltransferase  ali follow..  5................RIRSVIKEDLPTVYQFIKELAEFEKCEDQVEATIPNLEVAFGFIDEVTPVAYGVFIEENDQPAGMAIYFLNFSTWTSRVGIYLEDLYVRPQFRGKGYLLSYLARESLRIGGRRLDWVVLDWNQRAIEVYEKAGAQKVGG--RVTGENLKALADKLPGNF......................... 168
3 -6.350[OT] KOG3250 COP9 signalosome, subunit CSN7  ali follow..  12  51.......FGELLAEVLQLKDGPDSKHFETLNLFAYGTEYRAQPEKFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDN---RHLEDIIIEAIYADIIHGKLFQNTRILE--VDYAQGRDIPPGYTTLQAWVNSCDSVSNCIEMQIKYANAEKSKRLINKERVEQ............................. 219
4 -6.340[C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain  ali follow..  10  16.......MKEILAQLSQYPVSTRLSHAKLKERMDNGEGLPQYIKDHPIYYAKTPEGYASGSLGPTTAGRMDSYVDQLQALGGSM-----------IMLAKGNRSQQVTDACKKHGGFYLGLAQGSIKSLECVEYPELGMEAIWKIEVEDFPAFDDKGNDFFQQIQLTQCTRCVK.......................... 197
5 -5.920[S] COG4858 Uncharacterized membrane-bound protein conserved in bacteria  ali follow..  9TAKNKEYIHSVTKQLILVGKSDEEVKEILNDILPQIIEGQKSGIIARKLLGAPTEFVTQYQPKVADRP.................................................................................................................................... 76
6 -4.740[S] COG0718 Uncharacterized protein conserved in bacteria  ali follow..  10  2..FGKGGIGNLMKQAQQMQEKMQQMQEEVAKL---------------------------EVTGESGAGLVKVTINGAHNCRRVE-------------IDPSLLVEDDKEMLEDLIAAALNDAARRIDETQKEKMASVSNGMQ.......................................................... 101
7 -4.680[P] KOG0056 Heavy metal exporter HMT1, ABC superfamily  ali follow..  13  614...GKSTIMRLLFRFYDVQTGAILI-QNIKLVQQQSLAIGVVPQDTVLFNNTIFYNIEYAKLGASDEAVILGFPEKYETKVGERGLRLSGGEKQRVAIARTLLKAPIIVLLDEATSALDTHTERNIQAALARVCAN-AHRLSTIIHADEILVLQQ-GSIRHEELVLREDGIYADMWQQQLKNLDAEQSGGSDNGDASAES 833
8 -4.670[R] KOG4578 Uncharacterized conserved protein, contains KAZAL and TY domains  ali follow..  14  352...............................................................EPDPSHTLEERVVHWYFSQLDSNSSNDINKREMKPFKRYV--KKKAKPKKCARRFTDYCD--LNKDKVISLPELKGCLG--VSKEGRLV................................................ 434
9 -4.660[H] COG0157 Nicotinate-nucleotide pyrophosphorylase  ali follow..  11  109.........NLAMGLSGIATLTKIYVEKIADLPACLVD----TRKTTPGLRLLEKYATAMGGAINHRMGLDDAVMIKDNHIAAAGGIGKAITRIRSQIPYTLTIEVEAETIEQVKEALEYKADIIMLDN--MPVDLMRQAVQLIRQQDNGVKIEASGNVTLETIRAVAETGVD........................... 266
10 -4.540[O] COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components  ali follow..  15  401...GKSTISRLLFRFYDIQSGSITI-QDVRDVTQESLFIGMVPQDTVLFNDTIAYNIRYGRTDASEEDVIKHLPDGYKSMVGERGLKLSGGEKQRVAIARTILKAPPILILDEATSALDTATEQEIQSALDIVSRG-AHRLSTVIGADEIIVLKD-GLIAERGTHRHLLDQKGLYASMWDRQREASEAEERLRQVRESDD 616

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.