current user: public

If you have questions about the server, please let us know.

Query: HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .
# Score Template Links and tools%idFirst MLKENQGYVIRRTILFDNQCGFALGENSRAPNPFVTWQFNGQDGHRDYFWGHYMNEPDMAERDLLNRARDYQRRYHVEEVEQAPDKETYLYYSTQRPIDIGTYPNSYFNRPVHMDLYFTRQQVTGEIFQAWGAITYAHPLTEREMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQPPIAEQLKAAQREAQGHRGPELPKRSPLast
1 -6.130[J] KOG0875 60S ribosomal protein L5  ali follow..  10  2IVRVTNRDIICQIAYAHIEGDMIVCTAYAHELPKYGVKVGPTNYAAAYCTGLPLARRLLSRFGMDKIYEGQVEVTGDEYIVESIDGQPSAFTC----LDAGLARTTTGNKVFGALK---------------GAVDLSIPHSTKQFPGYGSESKEFNAEVHRK-HIMGQNVADYMCYLMEEDENAYKKQFSQ------KNRVTPDMMEEMYKEAAAIRENPVYENKPKKEVKKKRWNHPKMSLAQKKDWVAQKNA. 235
2 -5.570[S] COG4197 Uncharacterized protein conserved in bacteria, prophage-related  ali follow..  2...............................................................................................................................................TLKEFKSLRVGDAKKFAARLGVSPSYLSQMASGRTAISPTRALMIESATEGQVSRAELRPHDWELIWPEYASGIRLGQTHVVHAEGDCSACLSDGVDS.............. 100
3 -5.400[S] COG1627 Uncharacterized protein conserved in archaea  ali follow..  11  10..........................................................AVAEDIEEKIRRLRELGRIVTETEEQPPTP----------GPPKPPRRRVSRIGTFRERERRKRI--------GALVLTIIIVGAVISIYTYMESKAARELENAKRAKIAEVNKCFTGELANDTTKVQLINKILAAKNVEE----MSINVKAICEKRKQELEEAKRRAEELKRLKELQALKNQTKEN.......... 177
4 -5.150[S] COG4991 Uncharacterized protein with a bacterial SH3 domain homologue  ali follow..  14  33.LRTGPGYGTIGAIPNGVGIM-VAGCTRGY-----GWCQVSYGGMTGWAASRYIAIQTGN................................................................................................................................................................................................... 87
5 -5.030[R] KOG2321 WD40 repeat protein  ali follow..  383.................DDYKFVTKKELLN-----LDHLVGTGVIRAYMHGFFIDNNLYEKARLIANPFSYEEHRQKIVKERLEKQRASK-------IRSQNRPKVNAGLASRLSYQENKLRKKTGVTDGPSILEFTDK--DEDTLEYKQLHPSRSEARGLTAAEESEEEKEHTKGIKFSSDEESLSDMEEENETFDALVDRRKTEQQVSNEKTPQETIRSTPSGMEMTFKVEKKKKSKPVNRDEDSTSGKKKQ. 618
6 -4.990[O] KOG2292 Oligosaccharyltransferase, STT3 subunit  ali follow..  543.......................LSQNTADDARVMSW----------WDYGYQIANRTTLVDNNTWNNSHIALVGKAMSSTEEKSYEIMTSLDVDYVLVIFGG----------VIGYSGDDINKFLWMVRIAEGEHPKDIKESDYFTDRGEFRVDAEGAPALLNCLMYKLSYYRFGELKLDYRGPSGYDRTRNAVIGNKDFDLTYLEEAYTTVRIYRVKKPHEFNRPSLKTKERTIPPANFISRKNSKRRK.... 757
7 -4.700[O] COG2994 ACP:hemolysin acyltransferase (hemolysin-activating protein)  ali follow..  22  50.........ILPVLKNGQ---FALFSSNGHPVAYCTWAYFDEETEWQY............................................................................................................................................................................................................... 85
8 -4.680[J] KOG1646 40S ribosomal protein S6  ali follow..  12  130.......................................................................................................................................................PRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKR.. 231
9 -4.640[R] COG1287 Uncharacterized membrane protein, required for N-linked glycosylation  ali follow..  537.......................LRRNTPYDTKVMSW----------WDYGYQIADRITLVDNNTWNNTHIATVGKAMSSPEEKAYPILRKHDVDYILIIYGGTLGYSSDDMN-QGLWPDEIVERNFFTPNGEYRTDDAATPTMRESLLYKMSYHGAWKLFPPNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLV--------RLYKVKKPDTLGRDLKQ-VTLFEEGKRKKLRRPAKTNEIPLR......... 751
10 -4.500[R] KOG0274 Cdc4 and related F-box and WD-40 proteins  ali follow..  10  457VYDTVTGNFLINCILLDSNPLITMS------KHVKSWSYTIPKPFVN---DNLSKSSDYSKNEVEREIMLGLDQIAQERREKMEARQKFEQHFGEGLVG----------------------------------------LSEEEIIAYVTMLSQEE------------------------EAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNHEPPQEQANVAELNEQEQIELAMRLSL............ 659

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]