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Query: HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIMNPNILNKNPLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILEGTEAKILSDVVAQFYAYLSGCMFNDPVGMAIYAELHYMMSSLMLGEWFELast
1 -5.680[R] KOG2714 SETA binding protein SB1 and related proteins, contain BTB/POZ domain  ali follow..  11  498QVFIQKVVPITNKLFVRLSSTGKRICEITISSFTVRECEGSSRMGSRPRRYLFTGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSHLRES........ 626
2 -5.140[S] COG5510 Predicted small secreted protein  ali follow..  21  15..........................ILVAVAFLTSACNTMQGAGQDIQVAGKK......................................................................... 42
3 -4.990[U] KOG3103 Rab GTPase interacting factor, Golgi membrane protein  ali follow..  12  169FYCLLSLMVSRSQVTFGAVASVLGYCLLPMVVLSGINILITIQGTLGL-------VSGISIFWCAISASKLFATAFSMDHQQLLIAYPCAVLYGGFAL--------ITIY................. 264
4 -4.730[P] COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit  ali follow..  20  23...................................................ASFGVLRLPDVFTRAHAASKGSTL---GVNMILLGVFFAKILLGILFIFITSPIGGHLICRAAYN........... 94
5 -4.680[P] KOG3713 Voltage-gated K+ channel KCNB/KCNC  ali follow..  15  246..........NKLHFALSFMNIVDVLAILPFYVSLTLTHLGARMMELTNVQQAVQALRIMRIARIFKLAR-------HSSGLQTLTYALKRSFKELGLLLMYLAVGIFVFSALGYTMESIPQSFWW. 363
6 -4.450[P] COG1324 Uncharacterized protein involved in tolerance to divalent cations  ali follow..  13  1..........................MLGIVYITAGDMTNASEIARELVSRRLAACVSMFPIFSIYR----WNEQVEEQNEIALLVKTDSSRLDEIILHTYDLPAIEFWEIE............... 87
7 -4.440[S] KOG2946 Uncharacterized conserved protein  ali follow..  8  116AVVTLNSKLLGGNISFFQSVCVLGYCLTPVAISLIVCRVILLATQTRLLFFLRFVTTTIGFAWATYASFVFLGQSQPPHRKPLAVYPIFLFFFIISWLVLSHN........................ 218
8 -4.400[S] COG1963 Uncharacterized protein conserved in bacteria  ali follow..  14  19....AQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFN.................................. 107
9 -4.390[J] KOG3283 40S ribosomal protein S8  ali follow..  17  137................GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSG-----RLLACIASRPGQDGYILEGKELEFYMKKLQK.................................... 210
10 -4.380[S] KOG1793 Uncharacterized conserved protein  ali follow..  13  249.....HAAKSDRNANIERKPAFQKIKMLPEVKAIMLRAGIVEVLIEN-------GFMSALSEWLAPLPDKCLPALDIRITVLKLLHNPLGKAVMMLYKHPNETKENKGIANKL--------IGEW.. 367
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.