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Query: HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MRKFNYKRLIVMLVVVLAITCLMATTAFAAGTGDVAGAVESTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFEYRKSGQFEWAAPAILFACLVFTLTAPMYLWSIIGILast
1 -7.940[S] KOG4610 Uncharacterized conserved protein  ali follow..  17  1...........MAKIISTIKAILTRIIFSA-------SLLAIW-----QVVALKSDIIYWALCGPLLLLLLEGIFT--IMIKKTQEWRWFCPSVF---LYLSSIVPA-IWLL... 84
2 -7.370[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  14  1................MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTV.......... 99
3 -7.350[TV] KOG3966 p53-mediated apoptosis protein EI24/PIG8  ali follow..  16  171..........MMWVLPIFMLSKIVSSLWFADIANAAYRVRKGRPQLIPGISKLVADFLFSMV--VQMLFLVQSMLVNLVPVKYVGSS-----CFVHLCLLYSLYSFEYKWFNMGW 269
4 -6.890[S] COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein  ali follow..  14  1MRWIGVLVTALVLSACAANPPANTTSPTAGQSLDCTKPATIV--------QLVCHDRQLTSLDHRLSTAYQQALAHRRSAALEAAQSSWTMDTDPRTCV................ 99
5 -6.460[O] COG5264 Vacuolar transporter chaperone  ali follow..  19  125.....................................ANERTWLHVVVLLGSLAGERLGQAFGVVYTLLAIFIGFYAWKLHAKRSQMDYWGPLIVGTALAISLIVNMSF...... 216
6 -6.360[S] KOG3306 Predicted membrane protein  ali follow..  15  7IRSSPTLAFIVLQICFIFFASTFPCSSGSEDSYTITGRVKIPPSNVIGHIAKFSNVKV------------ILNGGQKITFLRPDGYFT-----------FHEVPAGTHLIEV... 95
7 -6.270[I] KOG3845 MLN, STAR and related lipid-binding proteins  ali follow..  17  22......KRFIVITFFDTSITILLWLLCTVTRDDDWDKVFF---NEINIFNPKFIRISLFDIV--LLAVLRMLILGVVYGICLVK---QWYTVAFTTLASSAYILMKVLFYF.... 118
8 -6.210[M] KOG0621 Phospholipid scramblase  ali follow..  15  196LIGSGCNQPLLIQSPVCAGCGGTQKFPVMTYNGALVGEIVRLYPGFMQEMFTDADTVHFPM--LLVTSVFL--IDFTYFEDRNQDRHHHGG........................ 292
9 -6.090[S] KOG2895 Uncharacterized conserved protein  ali follow..  13  169...YWGNILLLVYIWIFPESRRLFILSYSISYGTLAWSV--AWR----------NSLLFHSIDKITSLFIHFFPPLVLHTIVHLTNKSYLKKKIDLLSSVEIASFFYALWQIW.. 276
10 -5.770[T] KOG4743 Cyclin-dependent kinase inhibitor  ali follow..  15  1......................MSNVRVSNGS----PSLERMDARQAEHPKPSACRNLFGPVD--LTRDLEKHCRDMEEASQRKWNFD------------FQNHKPLYEWQEV.. 79

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.