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Query: HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MAQQKNEVQSLLEKAMFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKACGLLDDATLQCGKVVIFELPKVIEILRVSDKKNKFNVKSKKYNGKESNLast
1 -15.800[K] COG3311 Predicted transcriptional regulator  ali follow..  10  7........................................AGNLRVREMNQSAIVLSIPQVCATLGISRPTLDRYIKDNSFPRKKKIGPRLVGFLRSDIETYIGSLPDA................ 76
2 -13.900[L] COG4220 Phage DNA packaging protein, Nu1 subunit of terminase  ali follow..  21  3.......................................................VNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENEKLRKEVDDLRAA 72
3 -9.180[K] COG0789 Predicted transcriptional regulators  ali follow..  14  1.......................................................MNISDVAKITGLTSKAIRFYEEKGLVTPPLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVA 89
4 -8.080[L] COG2452 Predicted site-specific integrase-resolvase  ali follow..  22  2......................................................................MLRRWEASGRLMAEHTVGGHRRYDMAK............................ 28
5 -7.930[K] COG0640 Predicted transcriptional regulators  ali follow..  8  1.........................................................MNEITMQTQADQPKLAILSEARLVD--SIQMGREKIYRIADMVDWLDSILHSKSSGGSANYGLSPVND 75
6 -7.880[S] COG5484 Uncharacterized conserved protein  ali follow..  30  16.......................................................MKYKDLAEKYGVSVNTIKSWKQR----------------------GWQRKKGAPLKKGVHTKKVGAPLGN 64
7 -7.690[S] COG2442 Uncharacterized conserved protein  ali follow..  10  15......................................................VYVYAEVDKLIGLPAGTAKRWINGYERGGKDHP-GATPWVTWGEFVETRMLAEYRDRRKVPIVR....... 84
8 -7.100[K] COG1654 Biotin operon repressor  ali follow..  14  15..................................................ADGEFHSGEQLGERLGMSRAAINKLRDWGVDVFTVPGKGYSLLLDADRIHSQLDSGN.................. 80
9 -6.510[KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator  ali follow..  16  1MLEQQRNPADALTVSVLQVTNKPLRDSVKQALRNYLSQLDGQDVNELYELVLAEV-NQTRAATMLGINRGTLRK................................................... 91
10 -6.470[S] COG2964 Uncharacterized protein conserved in bacteria  ali follow..  10  161.....................SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEVADRLNISKHTVYLYIRQ............................................... 229
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.