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Query: HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDPLast
1 -15.500[S] COG4655 Predicted membrane protein  ali follow..  16  18..........................GDRKANFAVMTALSAPVALALAAVAIDEASIYSERREAQAMVDLAAITAASNINNVNTAVVTTLTDNGMPGV............................................ 89
2 -9.730[U] COG4961 Flp pilus assembly protein TadG  ali follow..  20  5......LVLVAASGRRRLIALVSRFAGDSRGVGAVEFAIVFPILLALYLTSFELTIGYNTYKRAATINDLISKTGSVDKTYLTGMQDVAAAVFAPYSTKGLKLKISGIK................................. 111
3 -7.320[NU] COG4726 Tfp pilus assembly protein PilX  ali follow..  15  9..........................YRQRGISLIVILLLLLVMTLIG--LAVLRTTLLQERMSANLRDRSSFQAAEAA............................................................... 60
4 -7.010[NU] COG4970 Tfp pilus assembly protein FimT  ali follow..  19  2..................TQRKLTPHAPAYGFSTVELMVTIAILAILAGLAYPSFMNLINGERLTSSANVASLQLART--------EAIRLGSPVTVCRSDDGITCRTGG................................ 87
5 -6.890[N] COG1681 Archaeal flagellins  ali follow..  15  6.........................RKGAVGIGTVFIAMVLVAAVAAAVLINTSGYL---QQKASGTGRETTQEVASGIKVDRVVGYAPDITGDIAGSSGIDLNKVRVI................................. 98
6 -6.870[U] COG4795 Type II secretory pathway, component PulJ  ali follow..  16  3..................RTNQVSSRQNMAG--TLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQRA............................................................... 62
7 -6.840[U] COG3156 Type II secretory pathway, component PulK  ali follow..  11  2.........................RAKQRGVALIVILLLLAVMVSIAATMAERLFSQFQRALNYQQAYWYSLGVEALAKKGIEQSYQDSETINLSQPWALKEQTYPLDYGQVRGKIR........................ 97
8 -6.420[U] COG4537 Competence protein ComGC  ali follow..  9  6.....................NNLRHKKLKG--TLLEMLLVILVISVLMLLF-VPNLSKQKDRVTETGNAAVVKLVENQ------------AELYELSQGSKPSLSQLKA................................ 80
9 -6.060[NU] COG4969 Tfp pilus assembly protein, major pilin PilA  ali follow..  13  2.........................NTLQKG--TLIELMIVIAIVGILAAVA-LPAYQDYTARAQVSEAILLAEGQKSA............................................................... 53
10 -6.050[R] KOG3656 FOG: 7 transmembrane receptor  ali follow..  14  77.................................GRVEKVVIGSILTLITLLTIAGNCLVVVKKLRQPSNYLIVSLALADLSVAVAVMPFVSVTDLIGGKGHFF--CNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT.. 189
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.