current user: public

If you have questions about the server, please let us know.

Query: HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .
# Score Template Links and tools%idFirst MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRNLast
1 -10.500[M] COG3065 Starvation-inducible outer membrane lipoprotein  ali follow..  4SKKFRNHKWMYGWLGLGALLLSGCVTIPPAIQGTTATPLQDLNLIRSAPKLFIGQEATVVNVKNEPNRTRLEIASVPLDSGARPILGEPSQGRVIAYVDG----FLEPVDFR------------GHLVTVVGPIVGVEAGKIGMTPYNFVVIK---ATGYKRW... 151
2 -9.620[R] KOG4680 Uncharacterized conserved protein, contains ML domain  ali follow..  1MSRIFAILPLAAVFLLLLVSPIVAIDVHYCEENAEYEVKVKEVDISSANTGREISFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAK--KELTC.......................................... 137
3 -9.460[R] KOG4745 Metalloproteinase inhibitor TIMP and related proteins  ali follow..  1MPGSPRPAPSWVLLLRLLALLRACS----CAPAHPQQIRAKISSEKVVPASADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQ----LLTGQVLSDGKVFIHLCNYIEPWE-------------------DLSLVQRESLNHHYHL 154
4 -8.610[M] COG1462 Uncharacterized protein involved in formation of curli polymers  ali follow..  10  1MSHSAKKALLPLLAVATLAGLAGCATETSTALPVQVRSPIAVGKFDNRSSYMRGIFSDGVDRLGGQAKTILITHLQQTNRFNV---LDRDNMSEIQQEAAIKGQAQRLKGADY-----------GDVTEFGRKELGRGKSQIAYAKVALNIVNISTSEVV...... 169
5 -8.500[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  2VKK----AIVTAMAVISLFTLMGCNNRA------------------EVDTLSPAQAAELKPMPQSWRGVL-----ADCEGIETSLFLEKDGTERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRA-----KGDALEMLDREGNPIESQFNYTLEP.... 137
6 -8.190[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  12  1MKPWPKALWQIVGGAALAVSLTGCAH--------------------QSAEAPVAAPISTATVAASVAQSTVHGTVNIRERVALP----PDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQAPFTYSLPFNPSDIQPNARVIVSAAITRN................ 127
7 -7.940[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  1MRK-----GCFGLVSLALLLLVGCRSHPEIPVNDEQSLVM--------ESSLLAAGISAEKPVLSTSDIQPSASSTLYNERQEPVTVHYRFYWY........................................................................ 81
8 -7.440[M] COG2980 Rare lipoprotein B  ali follow..  14  1MRYLA-----TLLLSLAVLITAGC----------------GWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKD---TASVFRNGQTAEYQMIMTVNATVLIYPISAKVFRSFFDNPQMALAKDNEQDMIV... 144
9 -7.320[R] COG3895 Predicted periplasmic protein  ali follow..  10  1MKNSYSALW-PAKVVLVALILGGLGLAIYCSPTET--LTIKMVEGSAIQVTLPDG-----------------------RTVVLPQAESASGNKYS---FITVWSKGNTALVEEGGNVKWQD--C.......................................... 107
10 -7.270[S] COG4808 Uncharacterized protein conserved in bacteria  ali follow..  5MKAF-NKLFSLVVASVLVFSLAGCGDKEE-ANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLS------AKYKNIAGVEEKLTYTDTYAQENVTIDMEK................................................... 116

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 0 4 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.