FFAS03 results for HGC00962

Query: HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 .`
#	Score	Template	Links and tools	%id	First	`MYFGAILCKKARQLRVYKAFGGRRHTEGRCSSIDENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGDMDMTRDEYSKMRGSSVREVSATHGTISFKDVMVFYKED`	Last
1	-12.600	`[K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain`	`ali follow..`	15	2	`..................................EEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYIEYRWLESEKGEIVGVLVVLYDHHVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVD.................`	118
2	-7.790	`[R] COG4710 Predicted DNA-binding protein with an HTH domain`	`ali follow..`	10	16	`..............................MHLSEGFDMATSIRLSPEMEQRLNYLASHTG-RTKAYYLREIIEHGIE.........................................................................................`	62
3	-7.580	`[K] COG3905 Predicted transcriptional regulator`	`ali follow..`	19	40	`...................................AIMTAFTVRLPDEVAEKLDQLAEKLD-RSRSYMAVQAIEDFVA.........................................................................................`	81
4	-6.370	`[K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain`	`ali follow..`	18	25	`.....................................ARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREK-QAESRLQALRELLAEGLNS....................................................................`	85
5	-5.850	`[S] COG4877 Uncharacterized protein conserved in bacteria`	`ali follow..`	16	2	`....................................ARKQVPLRLDPAVYDAIAKWAADEA-RSTNAQIEMMLR.............................................................................................`	38
6	-5.610	`[S] COG4453 Uncharacterized protein conserved in bacteria`	`ali follow..`	11	10	`.................................EATARGRITARLSADKQELLQLAADLSG-STLNQFVLQSA--------LRAAEQVIEHEETIKAIKLTVEQSRRFVALLDEPAKPNEALRRAMERFRKTKLGT...............................`	103
7	-5.550	`[S] COG3120 Uncharacterized protein conserved in bacteria`	`ali follow..`	15	80	`............................RHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGK-TLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG.....................................................................`	148
8	-5.290	`[K] COG1675 Transcription initiation factor IIE, alpha subunit`	`ali follow..`	12	1	`............................................................................................MKAETTTGVEELLNELVGRAAG---EVGLILFSLGIEGEFTDDQLSLELGIEINEIRKALFALYEIGLADYVRRR`	72
9	-5.050	`[T] KOG3537 Adaptor protein NUMB`	`ali follow..`	14	87	`.YLGCVEVFESRGMQVCEE---------KVLRQSRRRPVRGLLHVSGDGLRVVDD-------ETKGLIVDQTIE--VSFCAPDRNHSYICRDGTT----ACKDSGERLSHAVFAVCLERKQ..............................................`	203
10	-4.860	`[R] KOG4591 Uncharacterized conserved protein, contains BTB/POZ domain`	`ali follow..`	11	112	`..................................................................EAFHVAIRWYTDEIDLKMEDEKLLKVCETATSFRLEQLKNVCVQQLGALHVDNCIKIYEFAEKQKLGPAHFAQMTAALLYRLIDGNTKNVLHSIVSIGRED`	232

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster