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Query: PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217], from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTETLTYLLEHPDKITSEETTQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQENLast
1 -12.000[O] KOG0723 Molecular chaperone (DnaJ superfamily)  ali follow..  18  89....................................................................................................................................................................................................................................................................EQKMSRREAGLILVSPSAGKAKITAHRRVMILHPDKSPYVAAKINEAKDLLET 146
2 -11.700[S] COG4259 Uncharacterized protein conserved in bacteria  ali follow..  37.................................................................................................................................................................................................................................PDTVYEGLKNDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRLFPESGVFMDFLMKTGKGGKR. 123
3 -9.550[O] KOG4642 Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)  ali follow..  2..............................................................................................................................................................................................................................................KGKEEKEGGARLGAGGGSPEKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRMQQHEQALAD 82
4 -9.410[R] KOG2295 C2H2 Zn-finger protein  ali follow..  11  320..........................................................................PVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRRSEIEAVCN-YLRVAIADPERRWYFDVNIKEICWGLNN 578
5 -8.970[U] COG5122 Transport protein particle (TRAPP) complex subunit  ali follow..  15  167................................................................................................................................................................................................................................................................TSNLAIQIADNFLRKVY----------CLYSDYVMKDP-RSNLFDEKVKKMVENLQ. 219
6 -7.880[OT] KOG1308 Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein  ali follow..  10  90............................................................................................................................................................................................................................................EPDTDAPQEMGDENVEITEEMMDQANDKKVAAIE--VLNDGELQKAIDLFTDAIKLNPRLAILYAKRIQDCDRAIE. 176
7 -7.800[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  1MDVRRL-------------KVNELREELQR-------RGLDTRGLK---------------TELAER--LQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYVARDRSSGYPLTIEGFAYLWVRRGRVCFEMKINEEISVKHLPST................ 275
8 -7.760[U] KOG3369 Transport protein particle (TRAPP) complex subunit  ali follow..  16  159.................................................................................................................................................................................................................................................................SETGLNGIDLLLRKVY----------ELYSDYVLKNP-RCELFDNKLQELLAQVEK 211
9 -7.490[S] KOG3060 Uncharacterized conserved protein  ali follow..  17  158...........................................................................................................................................................................................................................................................................ELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHMGGVENMESART. 211
10 -7.440[M] KOG3364 Membrane protein involved in organellar division  ali follow..  13  83............................................................................................................................................................................................................................................................................LTIGCYKLGEYSMAKRYVDTLFEHERNNKQ--VGALKSVEDKIQK 126

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.