current user: public

If you have questions about the server, please let us know.

Query: PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150
# Score Template Links and tools%idFirst MANLDVLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEHGKDFIAQRLAPAEIPNDGKQTPCKGHPVFLAQHATGTCCRGCIEKWHRIEAGKSLSQEEQAYILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIELast
1 -7.420[C] COG3245 Cytochrome c5  ali follow..  17  22...........................FALTEADKNAIAERIKPVGDVYLAGSEPVQAAPTGPRDGATVYGTF------CTACLNGFNAMPPCMDCSDDEIVAAIEHMIAGL...................................... 135
2 -7.420[J] COG1998 Ribosomal protein S27AE  ali follow..  31  8................................................EIADGKLVRKHRFCPRCGPGVFLAEHADRFTCGRC................................................................... 42
3 -7.420[U] KOG1733 Mitochondrial import inner membrane translocase, subunit TIM13  ali follow..  18  37......................................................................LVTDISEKCTNKCITA-----PGSSLASGEKQCLQRCMDRFMESWNLVSQTLQKRLQEEMASSGGMGGGFGQGPSF.... 107
4 -7.270[R] COG3313 Predicted Fe-S protein  ali follow..  16  1......MFASIMFGVFVHALECSRPVGLVQAKLLLWALTASIM--VIILFEEGEVAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSDGEKQEVLRLC-------------RQRLMRKLRANKPASSDEPEQPSLF.... 125
5 -7.050[U] KOG3489 Mitochondrial import inner membrane translocase, subunit TIM8  ali follow..  23  35......................................................................LVHQMTELCWEKCMDK-----PGPKLDSRAEACFVNCVERFID..................................... 72
6 -6.770[U] KOG3480 Mitochondrial import inner membrane translocase, subunits TIM10/TIM12  ali follow..  20  28......................................................................LFNKLAQTCFNKCVDKRY---KEAELNMGENSCIDRCVSKYWQ..................................... 67
7 -6.690[U] KOG3479 Mitochondrial import inner membrane translocase, subunit TIM9  ali follow..  18  29........................................................................SNLVERCFTDCVNDF----TTSKLTNKEQTCIMKCSEKFLK..................................... 65
8 -6.640[S] COG4844 Uncharacterized protein conserved in bacteria  ali follow..  14  29....................................................................LDVLEYGCLSYCGTCMESLFALVNGEVVMGETPAELVENIYTFIEEN................................... 75
9 -6.600[S] COG3139 Uncharacterized protein conserved in bacteria  ali follow..  19  39...................................................................................LGKW---PDGVALTEEQKENCLQLVMLWQARNNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPI. 101
10 -6.550[C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit  ali follow..  16  323.......................................................................ADSLYNGTCNQC-NGWIGTLNGMSLDKREER----TLLKYLQMNASDTTNTPHSDKGEHNEK................. 394

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.