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Query: PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YLISFSFLLYSCDEKPKSGITNPSFLPNASGENNEMLIVMDSTKFKGKIGRELVDIYSSYISGLPQPEPRYDLRYIKPRKFNSILKHAKNIVVAFSLEGNSLDSEILRRNFNSESLDKIQSDSSLFYFVRRNQYARGQVVLYLFSENDDDLYSKIKRNRNSILKFFDDELKKRVDTEIFRKVENNLMDKIFTDHNIKIKIPYGYDLAKSINEENSNFFWLRQLDLEYDKNIFLYYEDYSNSELKNFYDVFNSSDINIKPIRAYISKKYLRDSEKSKIFMDIQDVFPIQSNKINFKGNLAIESRGLWKLSDISAGGPFLSKIIYDSKLKRVYYLEGYVYAPGLKKRGLMQEISSILMTFELast
1 -7.230[S] COG5468 Predicted secreted (periplasmic) protein  ali follow..  12  5AGALSLAALGGCQVRPLYSDGPTGSTSIALA---AIEISEADDRVEQEVRNALVFLTSRGQGEPVNPQYHLALS----------VSHRTMGVLYESTDNDHDDDDAGAGRIVVKADYNLTKTATGETVKAGNRVDFPQQEFAKIRAVRDGENRAAKELAEIIGADL................................................................................................................................................................................................. 162
2 -6.520[S] COG5435 Uncharacterized conserved protein  ali follow..  11  1.............................................................................................................................................................................................MYYFNEGSLELPEAWR-------DMTVNVLTSSLDETVGLSFTVSRDTPPWGMGFH-----EFFDREIGSLSRQLNHYQL-----------------LHQDTGEVNNHPSVTAEFCWSSE----QGRIHQLMTLVDIAPRVLILT--ATMVGELTPQQKEHITAIVQTLQ 135
3 -6.410[R] COG3218 ABC-type uncharacterized transport system, auxiliary component  ali follow..  15LAPLFAALMAGCAGAPNNDVSSAAVTQGPSLKSRQLLIYLGNSQWSDRLPRMVQSKLVEAF----EDTGKLGGVGRPGQGLAIDYQVVSDIRAFEIDTARNVANIEISVKLLNDRNGTVKAQEVFRASAR------------VSGSGNANFVKALDQAFAAATREIVAWTLKSL......................................................................................................................................................................................... 201
4 -6.110[M] COG3056 Uncharacterized lipoprotein  ali follow..  41FPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQ------EVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMS---QDTSIHEFIKQN...................................................................................................................................................................... 224
5 -6.050[S] COG4380 Uncharacterized protein conserved in bacteria  ali follow..  6LGLAAVLALSACQVQKAPDFDYTSFKES---KPASILVVPLNESPDVNGTWGVLASTAAPLS-----EAGYYV--FPAAVVEETFKQNGDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSNSGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGI............................................................................................................................................................................. 203
6 -5.960[P] COG0226 ABC-type phosphate transport system, periplasmic component  ali follow..  19.VLTLAMSLAACGGQQGSDNTATQDGSSGTAKDATASSPAKLDL-TGAGASFPAPLYASWFTDLNKKYPNLQINYMKDEEIQKVQRGVLLLIVLAYNLPGVTELNLPRVVYTDILLGKIKTWDAPEIKAANPNVNLPSQPITVVYRSDGSFTKHLAAVSPEWKSKVGEGKSVSWPVGVGGKGNEGVTAQIKQTQGAIGYIEYGYAK---------------------QNNISYATLENKAGKFVKYNDESASQTLAAIQLPENLRAFVPDPDGDGSYPIVSFSWIMAYKNYPDPVKAKAME--------------AAIEYALTE--GQKISGELGYIPLPQAVVQKTATVADQI..... 375
7 -5.180[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  15.GAALAVSLTGCAHQSAEAPVAAPISTATVAASVAQSTVHGTVNIRERVALPPDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQAPFTYSLPFNPSDIQPNARVIVSAAITRNGQLLFITDTIQEVINRGAGTQADLLLVPVPSVALEIVPAPAAATIQ....................................................................................................................................................................................................... 173
8 -5.130[L] KOG2475 CDC45 (cell division cycle 45)-like protein  ali follow..  4.............KRSDYASAYLKIKEASVSGGCTVQLFVALDPDALCACKLLSTLLKGD-------FISHKIRPVS-KTLLEQNEDIKFIILLNCGTMVD-----LNNYLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVFDDGDIEEDMNKI-DYQARSRRRFSEETTQRRAEIKEKRKKRKEFASILSEYYEKGSWYGESFAVASMLGREDNDMLWLA-----------------LTCLEIHCQSSKKYFNRSYSLLKDEVNR--LNPSPLENQIVGRAHGKTPHDQSIRLEDEFRFMLVRHWSLYDSMLHSAYVGHIWSEEGRKRLHKLQTYIHMNMDLKKTLKSSLKRFAPFYG 389
9 -5.000[W] KOG4802 Adhesion-type protein  ali follow..  242.............QTTDERVQLTDIRP---SRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANST------VNSDGSVTVTIVWDLPEEPDIPVHHYKVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQEVGAPFYQDGQLQVKVYNRYHVRASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSAL----KGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVT-PSDHYVLTVPNL-----RPSTLYRLEVQVL..... 637
10 -4.800[S] COG3009 Uncharacterized protein conserved in bacteria  ali follow..  1.MTIAALWLAGCSSGEINPVVQSGTQSTASQGNRLLWVIANNNLWASPLDQQLRNTLVANLSTQPLGSAQDTLN-----TVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPF--RLEGVQTQDGYDEM-----VKVLAGVWSQEAASIAQEIKRL............................................................................................................................................................................................................. 181

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.