|
current user: public |
|
Query: PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . | |||||||
# | Score | Template | Links and tools | %id | First | MSFSYSQVESKPQDSTEREYDYMIIEGDTIPREFIDLEEVIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRNILDNQPSVLNIDYFEASSKW | Last |
1 | -8.050 | [G] COG0383 Alpha-mannosidase | ali follow.. | 13 | 20 | ..................................................................YFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFARVKKQ-VEAGKLIITIVSAES------IVRNLMYG------MRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLW | 165 |
2 | -7.480 | [Z] KOG2046 Calponin | ali follow.. | 8 | 21 | ..............................................................................ADVQNRLLPKYDSQKEAELRSWIKGFTGLSIRPDFQK-GLKDGIILCTLVNKLQPGSVPKINGELALARKPLQLPQGNGQLRHDPVDLFEANDLFESGNNMQVRVSLLALAGK.................. | 135 |
3 | -6.920 | [R] KOG1877 Putative transmembrane protein cmp44E | ali follow.. | 12 | 34 | .....................................................VKRYKKL---IAEIFPRNQEEGINDRKIGKLCEYAAKNAVRMPKFFQISDSLEHRCYKELRNENFHSAKIAMCIYRR--------LLVTCKEQIPLF--SGFLRTVQALLDQTRQDE....................................... | 138 |
4 | -6.160 | [G] KOG0799 Branching enzyme | ali follow.. | 10 | 113 | ...................................................KSRIIPKTAQFKPLKLNGFARIVFADYEFIEKQVQAS---HPQNVFCFAIDANSSAEFQRKMKKLEQCLPNVVVLPVTESYDSKGHNINLAHYNCMKKLEWGYLMLLQNHDTKSVYE---------LDRIFELLGGVNDVFMSR.............. | 253 |
5 | -6.090 | [L] COG0177 Predicted EndoIII-related endonuclease | ali follow.. | 11 | 23 | ...........................................KPVRVKTAYSKDELTEIFRRFSIQRPEPKGELEHTNPFTLLVAVALSAQATDVGVNRATRALFKVA-DTPEKMLALGEEQLIGHIKKNVIALSQMLIDNFGGEVPKTR-EELVTLPGVGRKTAFGVPTLAVDTHVFRIANRL........................ | 178 |
6 | -6.090 | [A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15 | ali follow.. | 13 | 1 | .......................................................................................MSMTAGNVVFVGNIPYDVSEQ---QMTEIFNQVGPVKFKLVDPETGSGGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRN.................................. | 90 |
7 | -5.880 | [G] COG4678 Muramidase (phage lambda lysozyme) | ali follow.. | 10 | 78 | .................................................................YLRALMRTISASEANTPQPYNVIYGGQHVQDLSEHPNRCVKIFMGPNRGNCSTASGR--------------YQFLNT---------WAEKAGKYHPQ-NYSFEPEY--QDQVLYRWLADQLRAGHLDQ--------LRHLSPTW | 207 |
8 | -5.780 | [R] KOG3139 N-acetyltransferase | ali follow.. | 14 | 245 | ...................................NTQDIMRLIQAELSEPYSIYTYRYFIYNWPKLCFLASHDNQYVGAIRGYIAMLAVRKEYRK------LKIGTTLVTKAIEAMLADNADEVVLETEMRNQPALRLYENL--GFVR-----------DKRLFRY--YLNGVDALR............................... | 377 |
9 | -5.720 | [O] COG2192 Predicted carbamoyl transferase, NodU family | ali follow.. | 9 | 388 | .....AVYTVLSDDDLIARTVDAIVDEKAVMQGRMEFGPRALGGRSILGDPRSPIMQKTLNLKVKYRESFRPFAPSVRREDVAEWFDVDVDSPYMLLVGDVLDRRLNVPRSGIPAVTHVDYSARVQTVHRDTNPRYWELLSAFKQ-------TGCPVLVNTSFNVRGEPIVCTPEDAFRCFMGTEIE...................... | 581 |
10 | -5.640 | [N] COG1334 Uncharacterized flagellar protein FlaG | ali follow.. | 8 | 46 | .........................................................................................YKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGD----KVIREIPSKEAVELMQRMRDVIGIIFDKR........................................... | 118 |
FFAS is supported by the NIH grant R01-GM087218-01
|
![]() ![]() ![]() ![]() ![]() ![]() |
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98. |