FFAS03 results for PB012108

Query: PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 .`
#	Score	Template	Links and tools	%id	First	`MLSLLLIEYNSITKRFLSGNIENSIFVNQQNAMAKKEKKQLKKRLLHKYRMVILNEDTFEERVSLKLTRLNVFILVTLTSLLLIAGTTVLIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAINNQYYESIKKVLSGDVKSTDIDKDSILEAARISIDSINLSPSEEDLKLREKVALEDKYNVF`	Last
1	-7.040	`[R] KOG3335 Predicted coiled-coil protein`	`ali follow..`	14	3	`IGVFPAAKLGILAIKQVSKPIANVIKSNAKSSPFFRKYAQFYNWVEVKTKMWALNMGGLNEAMAIELGA-----LLGEFIIFSIGAGLLIFEYSRQTI--ENKKNELAQSEKMELTNMLTEMNFRLERQDAQIREMTRVLAD...............................................`	150
2	-5.480	`[J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2`	`ali follow..`	12	19	`.......................................................................................................SASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGAAAAAAPAAAGGAAPAAEEAAKEEAKEEEESFGLF`	109
3	-5.440	`[R] KOG0395 Ras-related GTPase`	`ali follow..`	9	19	`SYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVYNIRGDMYQLDILDTSGNHPFPAMR----RLSILTGDVFILVFSLD-----------------NRESFDEVKRLQKQILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVDEMF...`	183
4	-5.340	`[J] KOG1762 60s acidic ribosomal protein P1`	`ali follow..`	6	18	`........................................................................................................NDKINALIKAAGVNVEPFWPGVFAKALANVSIGNPICNVRAGGLAAAGDPTPSTAAASVEKKVEAKKEES---EESDEDMGFGLF`	99
5	-5.190	`[U] COG3701 Type IV secretory pathway, TrbF components`	`ali follow..`	8	1	`...............................MRFKRPQVRYADTPQPATPYQSAAQVWDDRIGSARVQAKNWRFMAFGCLTLVLLMAGGLVWRSAQSIVTPYVIEVDQSGQVRAVGEAATPYRPADAQIAHHLARF-------VTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYASKNDPFA..`	149
6	-4.760	`[K] KOG4029 Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1`	`ali follow..`	21	170	`.............................EQAEAELQQLRQAANVRERRRMQSIND-----------------------------------AFEGLRSHIPTLPYE-------KRLSKVDTLRLAIG----YINFLSELGEGVGHSKAPEGLGELTAKQTVGPT.........................`	258
7	-4.750	`[U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)`	`ali follow..`	13	236	`LLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEYAEIRDKNFNAVGSVL------------------SKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLV`	410
8	-4.740	`[K] KOG4395 Transcription factor Atonal, contains HTH domain`	`ali follow..`	20	99	`.................................TVQKRRRQAANARERKRMNGLNA-----------------------------------AFERLREVVPAPSID-------QKLSKFETLQMAQS----YILALCDLLNNGDVEVDAAAYTIFGDSDSGFGLSGGSLS...................`	189
9	-4.700	`[G] COG2814 Arabinose efflux permease`	`ali follow..`	9	29	`VFAMSVCAFALIASEFLPVSLLTPMARDLQVTEGM------TGQGIAISGAFAVLTSLFISALAGSLNRKTLLLGLTLAMGVSGAIVALAPNYAIY-RALIGVVVGGFWSMSA-------ATAIRMVPKRDVPRALAIVNGG...............................................`	159
10	-4.660	`[I] KOG3177 Oligoketide cyclase/lipid transport protein`	`ali follow..`	9	59	`TKADLTVGFKGLCETFDS---KVVCDPVALTVLADASHHRLFRRLKTHWSIEEASRGRVRVDLEVDFEFASKLHGMMSKFVGSSVASEIIQGFVQQAKIKHKLESENEK................................................................................`	164

FFAS is supported by the NIH grant R01-GM087218-01

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