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Query: PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RFYCHEVVQRWISPDGKVTDMALLRGFLFCYCDVWALGSDMEVRPHNSLYDDVVARSCAYPKMRILPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKALast
1 -9.040[R] COG5350 Predicted protein tyrosine phosphatase  ali follow..  15  67.....................................................................................................................................................................................................................................AHVLKLIDFAGEWDQSAPLLIHCWMGISRSPAAAVIAALSLYPD---------QDETELAQRLRTVSPYVTPNSRIIAIGDRLLGREGRLVKA 150
2 -7.140[NT] COG3143 Chemotaxis protein  ali follow..  9  1..........................................................................................MMQPSIKPADEGSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPIELSDARELVTDTRQFLRDVPGHTS--------FTNAQLLDIMMAQDFQDLT--GQVIKRMMDVIQEIERQLLMVLLENIPEQSARPKRENESLLNGPQVDTSKAGVVASQDQVDDLLDSL.......... 212
3 -6.800[C] COG3245 Cytochrome c5  ali follow..  9  50...........................................................................................................................................................................................................................................VQAAPTGPRDGATVTFCTACHSAGISGAPKTG--RIAQGKDVLKNHALNGFNAMPPKGTCMD---SDDEIVAAIEHMIAGL...... 135
4 -5.990[G] COG2190 Phosphotransferase system IIA components  ali follow..  12  64..................................................................................................................................................................................................................................TEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPIL-YLNANARSMISPVVCSNIDDFSGLIIKAQGHIVAGQTPLYEIKK........... 152
5 -5.780[H] COG5031 Uncharacterized protein involved in ubiquinone biosynthesis  ali follow..  11  19................................................................................................................................................FLADRALKPSNGNTDPVF---------DFEDALDQTEMAQLAVDELKKIPEVNTLFAERWLPAPFNLDDLAKLPEGTLGHVYDDISYLKMLWRSTHDIY-------HVVAGFDTDGIGEIGLQAFVLAQTPIPISVMLVSFGMVMTSLGSHTPRKLIAQKWDQFWDVPVIEIRECLG. 218
6 -5.780[R] COG3541 Predicted nucleotidyltransferase  ali follow..  12  211....................................................................................................................................................................TLPDETLEYTQNLTNSRKDFIRLLQKSQNYQIALREWKAYLSWQENRNPARAEMERKSGFDLKHGMHCIRLLRSGLEILKTGE-----ITVDRRVAGDVEDLKAILQGEYSYQQV-MEMADDLVAQMDAAYEHSTIPHRPDLEAINNLCMELVEM... 359
7 -5.770[V] KOG1716 Dual specificity phosphatase  ali follow..  6  109............................................................................................................................................................................................................................................DDAIKFLDQARVLVHCMSGKSR--SPAVVVAYLMKRKG----WRLAESHQWVKQRRPSTD--ISPGKYLDFGLETYLLFLKLLLIA 191
8 -5.770[O] KOG0823 Predicted E3 ubiquitin ligase  ali follow..  10  1......................................................................................................................................................MDLDLNQE----PEELESAQERIQERIRQLEVIVSRIREREITTTTTPALVSPNEHRDSTAGVIHERSRERLVENGENKTYLIAKALNMEEKAEDG----HCFYQL----------PLIYLNIKECPVCDGEVTDAEVIPIYGNGDDCDGTKPKLED-------SLPPRPNA 195
9 -5.750[S] COG4876 Uncharacterized protein conserved in bacteria  ali follow..  15  7..............................................................................................................................................DYPASLKNLEKPVRKKA------IDIANAMIDEGYEEGRAIPIATSKAKEWAENASTDEIDDFLTHDDETERDADPSSGSGPELMNKAEHVIKHKKGWAVKAEGA--KRVSEIKD--TKKEAIERAKEIAAHKGTEVIVHLADGSVQRKIKTGS.......................... 150
10 -5.670[M] COG1462 Uncharacterized protein involved in formation of curli polymers  ali follow..  15  88..................................................................................................................................................................................................................................QTNRFNVLDRDNMSEIQQEQRLKG--VTEFGRKEVGDRQLFGIGKSQIAYAKVAVNISTSEVVYSTQGAGESTLNGKVLDLAMREAVNKLVNAVDS 220
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.